PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01025916001
Common NameLOC100253426, VIT_18s0041g02140
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MIKC_MADS
Protein Properties Length: 199aa    MW: 22651.5 Da    PI: 8.0708
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01025916001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.93.5e-25958150
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       krien   rqvtf+kRr+g+lKKA+ELSvLCdae+ + ifs +gklye +
  GSVIVT01025916001  9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGIFIFSAHGKLYELA 58
                       79*********************************************965 PP
2K-box60.47.3e-2178172599
              K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                        ++ +++ea+    ++e++ Lk eie Lq+ +R +lG + ++++l eL+  e++Le  + +iRs K+e+++++i+ l++ke  l+ +n++L++
  GSVIVT01025916001  78 QDDQAKEAQLLDTKEEINMLKHEIELLQKGLRYMLGGGAGTMTLDELHIFEKHLEIWIYNIRSAKMEIMFQEIQLLKNKEGILKAANNYLQE 169
                        4445788888999******************************************************************************9 PP

              K-box  97 kle 99 
                        +++
  GSVIVT01025916001 170 MID 172
                        987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-35160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.801161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-27175IPR002100Transcription factor, MADS-box
CDDcd002651.68E-39279No hitNo description
PRINTSPR004046.3E-27323IPR002100Transcription factor, MADS-box
PfamPF003192.2E-221056IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.21387177IPR002487Transcription factor, K-box
PfamPF014863.7E-2188171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MARGKIQMKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGIFIFSA HGKLYELATK  60
GTMQGLIEKY MKSSCGSQDD QAKEAQLLDT KEEINMLKHE IELLQKGLRY MLGGGAGTMT  120
LDELHIFEKH LEIWIYNIRS AKMEIMFQEI QLLKNKEGIL KAANNYLQEM IDDQTGITNI  180
APMINPYPLT TQNEIFQT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-15174173MEF2 CHIMERA
6byy_B2e-15174173MEF2 CHIMERA
6byy_C2e-15174173MEF2 CHIMERA
6byy_D2e-15174173MEF2 CHIMERA
6bz1_A2e-15174173MEF2 CHIMERA
6bz1_B2e-15174173MEF2 CHIMERA
6bz1_C2e-15174173MEF2 CHIMERA
6bz1_D2e-15174173MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves and spikelets (rice flower). {ECO:0000269|Ref.7}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4514741e-96AM451474.1 Vitis vinifera contig VV78X101988.23, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278239.11e-146PREDICTED: agamous-like MADS-box protein AGL12
SwissprotA2YQK94e-78MAD26_ORYSI; MADS-box transcription factor 26
SwissprotQ0J8G84e-78MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBLD7U9121e-144D7U912_VITVI; Uncharacterized protein
STRINGVIT_18s0041g02140.t011e-145(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.12e-78AGAMOUS-like 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lee S, et al.
    Further characterization of a rice AGL12 group MADS-box gene, OsMADS26.
    Plant Physiol., 2008. 147(1): p. 156-68
    [PMID:18354041]
  3. Khong GN, et al.
    OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice.
    Plant Physiol., 2015. 169(4): p. 2935-49
    [PMID:26424158]