PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01026055001

Common Name

LOC100263202, VIT_18s0041g00700

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

NAC

Protein Properties

Length: 226aa MW: 26238.6 Da PI: 8.9381

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01026055001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	149.7	1.5e-46	4	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrF Pt+eelv++yL+ k++gk+l++ ++vi++v+iy++ePw+Lp+ ++ ++++w+fF++r+ ++ +g r++r+t sgyWkatg GSVIVT01026055001 4 LPPGFRFYPTEEELVSFYLRMKLQGKRLQElNRVIPDVNIYELEPWHLPRlsgeVCRRDTEQWFFFIPRQAREVQGGRPSRTTGSGYWKATG 95 79***********************7661556**********9546654445677*************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + v+s++++++g+kkt+vfy+g+ap g+kt+W m+eyr+ GSVIVT01026055001 96 SPSYVYSSDNRVIGVKKTMVFYNGKAPAGRKTKWKMQEYRA 136 *************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-48	3	155	IPR003441	NAC domain
PROSITE profile	PS51005	48.548	4	157	IPR003441	NAC domain
Pfam	PF02365	4.9E-24	5	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MEDLPPGFRF YPTEEELVSF YLRMKLQGKR LQELNRVIPD VNIYELEPWH LPRLSGEVCR 60 RDTEQWFFFI PRQAREVQGG RPSRTTGSGY WKATGSPSYV YSSDNRVIGV KKTMVFYNGK 120 APAGRKTKWK MQEYRAIEAD ATPKLRHEFS LSRVYVISGS FRAFDRRPLG TVTREETSQQ 180 DTQMMEKRSS SPECSYSGGY DHVHLQASSA PIDDFLWDWG QLDWL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-35	4	155	17	163	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-35	4	155	17	163	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-35	4	155	17	163	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-35	4	155	17	163	NO APICAL MERISTEM PROTEIN
3swm_A	4e-35	4	155	20	166	NAC domain-containing protein 19
3swm_B	4e-35	4	155	20	166	NAC domain-containing protein 19
3swm_C	4e-35	4	155	20	166	NAC domain-containing protein 19
3swm_D	4e-35	4	155	20	166	NAC domain-containing protein 19
3swp_A	4e-35	4	155	20	166	NAC domain-containing protein 19
3swp_B	4e-35	4	155	20	166	NAC domain-containing protein 19
3swp_C	4e-35	4	155	20	166	NAC domain-containing protein 19
3swp_D	4e-35	4	155	20	166	NAC domain-containing protein 19
4dul_A	5e-35	4	155	17	163	NAC domain-containing protein 19
4dul_B	5e-35	4	155	17	163	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM457683	1e-143	AM457683.1 Vitis vinifera contig VV78X133673.15, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002266232.1	1e-164	PREDICTED: NAC domain-containing protein 90
Swissprot	Q9FMR3	1e-88	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	F6I3Y7	1e-162	F6I3Y7_VITVI; Uncharacterized protein
STRING	VIT_18s0041g00700.t01	1e-163	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2278	11	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	5e-91	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	GSVIVT01026055001
Entrez Gene	100263202

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]