PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01026222001

Common Name

LOC100263121, VIT_10s0042g00940

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

Trihelix

Protein Properties

Length: 258aa MW: 29105.2 Da PI: 9.3217

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01026222001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	55.2	1.9e-17	21	99	2	72
trihelix 2 WtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 Wt +e++ Liea++ +++r +++ ++ +W++v ++++++g+ rs++qC++kw+nl ++ykk+++ e++ GSVIVT01026222001 21 WTVNETMILIEAKKMDDQRRMKRSgenegrskPAELRWKWVEDYCWRKGCLRSQNQCNDKWDNLMRDYKKVRDYERRLL 99 ***********9777666643222333333999*************************************99864 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.073	13	85	IPR017877	Myb-like domain
Pfam	PF13837	6.9E-13	20	95	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MADQGGSSAV TVMRDYRKGN WTVNETMILI EAKKMDDQRR MKRSGENEGR SKPAELRWKW 60 VEDYCWRKGC LRSQNQCNDK WDNLMRDYKK VRDYERRLLS ERGDSGDHDG GPSSSSSYWM 120 IDKNERKEKN LPSNMLRQIY EGLVEVVERK GVGTTSSAAA AAHQRVMSVS VAALPPPPPL 180 PPPPSAPQPP QQPQQPHIAY PQPLPSLAQI LIQVSIQTHQ QSGGEEVVEK AQVVVLLLQV 240 EAPQLKWVLQ FQKVLPL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM456255	0.0	AM456255.2 Vitis vinifera contig VV78X217219.6, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019078042.1	1e-146	PREDICTED: uncharacterized protein LOC100263121 isoform X3
TrEMBL	F6HIS4	1e-153	F6HIS4_VITVI; Uncharacterized protein
STRING	VIT_10s0042g00940.t01	1e-153	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1881	16	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	7e-61	Trihelix family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01026222001
Entrez Gene	100263121