PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01026334001
Common NameVIT_04s0043g00510
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 45aa    MW: 5173.85 Da    PI: 10.4231
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01026334001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.56.8e-13744243
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAa 43
                       +y+GV  ++ +g+Wv+eIr+p        + ++lg+f tae+Aa
  GSVIVT01026334001  7 RYRGVQ-HRHWGSWVSEIRHP-----LlkTGIWLGTFETAEDAA 44
                       69***6.777**********8.....334*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.47E-15644No hitNo description
SMARTSM003809.0E-6744IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-19744IPR001471AP2/ERF domain
PfamPF008475.1E-5744IPR001471AP2/ERF domain
PROSITE profilePS5103214.855744IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-11744IPR016177DNA-binding domain
PRINTSPR003677.6E-9819IPR001471AP2/ERF domain
PRINTSPR003677.6E-93044IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 45 aa     Download sequence    Send to blast
MARPQQRYRG VQHRHWGSWV SEIRHPLLKT GIWLGTFETA EDAA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.18352e-55bud| cell culture| flower| fruit| inflorescence| leaf
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4334951e-37AM433495.2 Vitis vinifera contig VV78X261825.13, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008808223.12e-23ethylene-responsive transcription factor ERF003-like
RefseqXP_009601361.13e-23PREDICTED: ethylene-responsive transcription factor ERF003-like isoform X2
RefseqXP_009771670.12e-23PREDICTED: ethylene-responsive transcription factor ERF003-like
RefseqXP_010089946.13e-23ethylene-responsive transcription factor ERF003
RefseqXP_016497010.12e-23PREDICTED: ethylene-responsive transcription factor ERF003-like
RefseqXP_016512703.13e-23PREDICTED: ethylene-responsive transcription factor ERF003-like isoform X2
RefseqXP_019247900.11e-23PREDICTED: ethylene-responsive transcription factor ERF003
RefseqXP_022842116.11e-23ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW51e-23ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLD7TDS31e-24D7TDS3_VITVI; Uncharacterized protein
STRINGVIT_04s0043g00510.t012e-25(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.16e-26ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]