PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01026468001
Common NameVIT_04s0044g01500
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 199aa    MW: 22707.4 Da    PI: 4.1292
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01026468001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM117.71.1e-3681261128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGf+F Ptdeelv ++L +k++  ++   ++i+++d y ++Pw+L  k+ ++ ++wyfFs++         + ratk+gyWk+   d+++
  GSVIVT01026468001   8 LPPGFQFYPTDEELVLDFLYRKASLLPCYP-NIIPDLDSYVHDPWELSGKALSSGNQWYFFSQKT--------QDRATKNGYWKQLDIDEAI 90 
                        79*************************888.89**************977778899******975........4799*************** PP

                NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++ g++vg+kk L fy g+ap+g +t+W+m+ey+l
  GSVIVT01026468001  91 YTSAGKKVGIKKYLLFYMGEAPEGIETNWIMQEYSL 126
                        **********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-445157IPR003441NAC domain
PROSITE profilePS5100543.0568158IPR003441NAC domain
PfamPF023651.4E-219126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MEEGSINLPP GFQFYPTDEE LVLDFLYRKA SLLPCYPNII PDLDSYVHDP WELSGKALSS  60
GNQWYFFSQK TQDRATKNGY WKQLDIDEAI YTSAGKKVGI KKYLLFYMGE APEGIETNWI  120
MQEYSLSNSG LGCTSYKRIA GKKILDGVEW VLCRVYERKS SQHGFWCDED DDDGTELSCL  180
DEIFLSLDDD LDEISLPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-38616315170NO APICAL MERISTEM PROTEIN
1ut4_B1e-38616315170NO APICAL MERISTEM PROTEIN
1ut7_A1e-38616315170NO APICAL MERISTEM PROTEIN
1ut7_B1e-38616315170NO APICAL MERISTEM PROTEIN
3swm_A1e-38616318173NAC domain-containing protein 19
3swm_B1e-38616318173NAC domain-containing protein 19
3swm_C1e-38616318173NAC domain-containing protein 19
3swm_D1e-38616318173NAC domain-containing protein 19
3swp_A1e-38616318173NAC domain-containing protein 19
3swp_B1e-38616318173NAC domain-containing protein 19
3swp_C1e-38616318173NAC domain-containing protein 19
3swp_D1e-38616318173NAC domain-containing protein 19
4dul_A1e-38616315170NAC domain-containing protein 19
4dul_B1e-38616315170NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4306301e-150AM430630.2 Vitis vinifera contig VV78X091730.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002264894.31e-145PREDICTED: NAC domain-containing protein 104
SwissprotQ8GWK62e-73NC104_ARATH; NAC domain-containing protein 104
TrEMBLD7U4C61e-144D7U4C6_VITVI; Uncharacterized protein
STRINGVIT_04s0044g01500.t011e-145(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP45101024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.19e-66xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]