PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01026636001

Common Name

VIT_04s0044g00160

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

WOX

Protein Properties

Length: 237aa MW: 26755.8 Da PI: 6.5114

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01026636001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.9	4.9e-20	60	120	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + +ps+++++e+++ l +++e++V++WFqNrRa+ k+ GSVIVT01026636001 60 RQRWTPTPVQLQILERIFDQgYGTPSKQKIKEITSDLsqhgQISETNVYNWFQNRRAQSKR 120 89***************99***********************************997 PP
2	Wus_type_Homeobox	98.4	5.6e-32	59	122	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G tP+k++i++it+ L+++G+i+++NV++WFQNr+a +++kq GSVIVT01026636001 59 ARQRWTPTPVQLQILERIFDQGYGTPSKQKIKEITSDLSQHGQISETNVYNWFQNRRAQSKRKQ 122 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-16	55	127	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.009	56	121	IPR001356	Homeobox domain
SMART	SM00389	1.1E-12	58	125	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.7E-17	59	122	IPR009057	Homeodomain-like
CDD	cd00086	5.03E-12	60	122	No hit	No description
Pfam	PF00046	6.7E-18	60	120	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MTDAQVEILR KQISVYATIC EQLVEMHKSL TSHQDLAGVR LGNLYCDPLM TSTGHKISAR 60 QRWTPTPVQL QILERIFDQG YGTPSKQKIK EITSDLSQHG QISETNVYNW FQNRRAQSKR 120 KQLITMPNNA ESEVATEVES PKDQKTKSEN FLPQQNSASR PEDLCFQNPE IGSRLHFLDQ 180 QTHKEENIFP SDGGIKPSGN PSQVAFYAGN DHQIGKMEVP GSYNPYQHTE DYSMTG*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.26732	0.0	cell culture\| fruit\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM473516	0.0	AM473516.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X249614.21, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002272863.1	1e-178	PREDICTED: WUSCHEL-related homeobox 13
Swissprot	O81788	8e-85	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	D7U464	1e-178	D7U464_VITVI; Uncharacterized protein
STRING	VIT_04s0044g00160.t01	1e-179	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1873	16	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	3e-87	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	GSVIVT01026636001

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]