PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01026638001

Common Name

VIT_04s0044g00150

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

WOX

Protein Properties

Length: 240aa MW: 27055.3 Da PI: 6.516

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01026638001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.5	1.5e-20	63	123	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + +ps+++++e+++ l +++e++V++WFqNrRa+ k+ GSVIVT01026638001 63 RQRWTPTPVQLQILERIFDQgYGTPSKQKIKEITSDLsqhgQISETNVYNWFQNRRARSKR 123 89***************99************************************97 PP
2	Wus_type_Homeobox	102.1	3.9e-33	62	125	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G tP+k++i++it+ L+++G+i+++NV++WFQNr+aR+++kq GSVIVT01026638001 62 ARQRWTPTPVQLQILERIFDQGYGTPSKQKIKEITSDLSQHGQISETNVYNWFQNRRARSKRKQ 125 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-16	58	125	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.382	59	124	IPR001356	Homeobox domain
SMART	SM00389	8.9E-14	61	128	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.52E-17	62	125	IPR009057	Homeodomain-like
CDD	cd00086	1.17E-12	63	125	No hit	No description
Pfam	PF00046	2.1E-18	63	123	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MKVMTDAQME ILRKQISVYA TICEQLVEMH KSLTSHQDLA GVRLGNLYCD PLMTSTGHKI 60 TARQRWTPTP VQLQILERIF DQGYGTPSKQ KIKEITSDLS QHGQISETNV YNWFQNRRAR 120 SKRKQLVTAP NNADSEVETE VESPKDKKTK SENFLPQQNS ASRPEDLCFQ NPELGSRLDF 180 LDQQTHKEEA IFPSDGGIKP SGNLSPVAFY AGNDHQIGKM EVPGSYNPYQ QTEDYSMSG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	124	RRARSKRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.26732	0.0	cell culture\| fruit\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM463736	0.0	AM463736.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X249614.20, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002279942.1	0.0	PREDICTED: WUSCHEL-related homeobox 13
Swissprot	O81788	2e-86	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	D7U465	1e-180	D7U465_VITVI; Uncharacterized protein
STRING	VIT_04s0044g00150.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1873	16	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	8e-89	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	GSVIVT01026638001

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]