PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01026927001
Common NameVIT_15s0046g02560
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 640aa    MW: 71999.3 Da    PI: 4.9851
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01026927001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.50.000284514841755
                        HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        +++f  Lr+++P+ +      K + ++iL  ++eY+k+L+
  GSVIVT01026927001 451 KEKFLVLRSMVPSiN------KIDEVSILGDTIEYLKKLE 484
                        578999*******77......9***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.0E-5515196IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508888.702434483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-9439494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.54E-6440488No hitNo description
SMARTSM003533.2E-5443489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-8451500IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0048629Biological Processtrichome patterning
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MANGVQNQEG VPENLSKQLA VAVRSIQWSY AIFWSLSTRQ QGVLEWSGGY YNGDIKTRKT  60
VQEMELKADK MGLQRSEQLR ELYESLLEGE TDQQSKRPSA ALSPEDLSDA EWYYLVCMSF  120
VFNPGEGLPG RALANGQSIW LCDAQYADSK VFSRSLLAKS ASIQTVVCFP HMGGVIELGV  180
TELVPEDPSL IQHIKACLLE LSKPICSEKS SFVPCNTDDD KDRMCAKVDH DIEGMSELHG  240
NIHEEHNIGS PDDCSNGCED DHQTEDSFML EGINGGASQV QSWHFVDDDF SNGVQGSMDS  300
SDCISQAFVN QERIHSSPKG ENVNNVRLKD LQECNDTKFS SLDLGADDDL HYRRTISTVL  360
RKSHPLIGNS CFRCYDIKSS FITWKKGGML DAQKPQTQQR ILKKILFTVP LMHGGCGFKS  420
QKENAGRDGL WKSGSDGICK QHALSDKKRE KEKFLVLRSM VPSINKIDEV SILGDTIEYL  480
KKLEARVEEL ETSMDLQTEL EARARQKYLD MVEQTSDNYD DKMIDDGKKL WINKRKACDI  540
DETDLEINEI IPKDSLPSSD MKVRINEQEV LIEMRCPWRE YLLLDIMDAI NNLHLDCHSV  600
QSSNHDGFLT LTLKSKFRGR AVASAGMIKQ ALWRITSKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A9e-142819463227Transcription factor MYC3
4ywc_A9e-142819463227Transcription factor MYC3
4ywc_B9e-142819463227Transcription factor MYC3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.99520.0bud| fruit| inflorescence| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1930020.0EF193002.3 Vitis vinifera myc anthocyanin regulatory protein (MYCA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010661717.10.0PREDICTED: myc anthocyanin regulatory protein isoform X1
TrEMBLF6I6290.0F6I629_VITVI; Uncharacterized protein
STRINGVIT_15s0046g02560.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP24471429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-178bHLH family protein
Publications ? help Back to Top
  1. Matus JT, et al.
    Post-veraison sunlight exposure induces MYB-mediated transcriptional regulation of anthocyanin and flavonol synthesis in berry skins of Vitis vinifera.
    J. Exp. Bot., 2009. 60(3): p. 853-67
    [PMID:19129169]
  2. Matus JT, et al.
    Isolation of WDR and bHLH genes related to flavonoid synthesis in grapevine (Vitis vinifera L.).
    Plant Mol. Biol., 2010. 72(6): p. 607-20
    [PMID:20112051]