PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01026969001
Common NameLOC100267186, VIT_15s0046g02150
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 202aa    MW: 22617.8 Da    PI: 9.5816
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01026969001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1017.2e-32122180159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK vk+s +prsYYrCt+++C vkk+v+r ++d++vv++tYeg Hnh+
  GSVIVT01026969001 122 LDDGYRWRKYGQKAVKNSIYPRSYYRCTHHTCDVKKQVQRLSKDTSVVVTTYEGIHNHP 180
                        59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-32108180IPR003657WRKY domain
SuperFamilySSF1182906.41E-28116181IPR003657WRKY domain
PROSITE profilePS5081128.541117182IPR003657WRKY domain
SMARTSM007747.6E-37122181IPR003657WRKY domain
PfamPF031062.1E-25123180IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MDGDGDHAPP PPPPPLLPLP SQASSFLFTP SLPSSSMHPH LQLPPPPLPP LQAQILGDID  60
WATLLSAQTG LSDLYPRAEG TSSVMAEEEK GSIKDRRKGV RTTRKATRPR FAFQTRSVDD  120
ILDDGYRWRK YGQKAVKNSI YPRSYYRCTH HTCDVKKQVQ RLSKDTSVVV TTYEGIHNHP  180
CEKLMETLSP LLKQIQFLSR F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-24112179774Probable WRKY transcription factor 4
2ayd_A5e-24110179271WRKY transcription factor 1
2lex_A5e-24112179774Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.291870.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00539DAPTransfer from AT5G41570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4254900.0AM425490.2 Vitis vinifera contig VV78X038611.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275528.31e-147PREDICTED: probable WRKY transcription factor 24
SwissprotQ9FFS32e-54WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBLA0A438JLT21e-146A0A438JLT2_VITVI; Putative WRKY transcription factor 24
TrEMBLD7UCE61e-146D7UCE6_VITVI; Uncharacterized protein
STRINGVIT_15s0046g02150.t011e-147(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.15e-58WRKY DNA-binding protein 24