PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01027173001
Common NameVIT_15s0046g00230
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family LBD
Protein Properties Length: 155aa    MW: 17638.3 Da    PI: 6.5088
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01027173001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260109.23.1e-342948100
             DUF260   8 lrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                        lrr+C +dC+lapyfp+ +++kfa vh++FGasnv+++++ ++e++reda+++++yeA ar+rdPvyG++g i++lq+ ++ lk++l+++++
  GSVIVT01027173001   2 LRRRCDRDCILAPYFPSYEAEKFAGVHRVFGASNVIRMIQMVEESRREDAVKAIIYEATARLRDPVYGSAGAIFHLQKMIQDLKTQLDSIRT 93 
                        89*************************************************************************************99887 PP

             DUF260 100 e 100
                        +
  GSVIVT01027173001  94 Q 94 
                        6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.799195IPR004883Lateral organ boundaries, LOB
PfamPF031953.9E-34192IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MLRRRCDRDC ILAPYFPSYE AEKFAGVHRV FGASNVIRMI QMVEESRRED AVKAIIYEAT  60
ARLRDPVYGS AGAIFHLQKM IQDLKTQLDS IRTQTLVLQE QRDQLLGILK NVHHMDPVSP  120
MDFPMFGAAG SLSNGDILRY DPSTFPLDYC DWIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-3019617112LOB family transfactor Ramosa2.1
5ly0_B3e-3019617112LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.212730.0flower
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4440130.0AM444013.2 Vitis vinifera contig VV78X034710.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010661963.21e-108PREDICTED: LOB domain-containing protein 1
TrEMBLA0A438IF721e-107A0A438IF72_VITVI; LOB domain-containing protein 1
STRINGVIT_15s0046g00230.t011e-107(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1325945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.14e-40LOB domain-containing protein 1