PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01027182001
Common NamemybPA1
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 255aa    MW: 28600.1 Da    PI: 8.3349
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01027182001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.71.8e-151461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+WT+ Ed ll ++++ +G g+W++ +++ g+ R++k+c++rw +yl
  GSVIVT01027182001 14 RGSWTAREDTLLTKYIQAHGEGHWRSLPKKAGLLRCGKSCRLRWMNYL 61
                       89******************************99************97 PP
2Myb_DNA-binding53.84.5e-1767112148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg+ T++Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
  GSVIVT01027182001  67 RGNITPDEDDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                        7999******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.588961IPR017930Myb domain
SuperFamilySSF466891.61E-2911108IPR009057Homeodomain-like
SMARTSM007175.5E-121363IPR001005SANT/Myb domain
PfamPF002491.5E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-231568IPR009057Homeodomain-like
CDDcd001673.12E-91661No hitNo description
PROSITE profilePS5129427.362116IPR017930Myb domain
SMARTSM007172.1E-1666114IPR001005SANT/Myb domain
PfamPF002491.5E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-2769116IPR009057Homeodomain-like
CDDcd001674.07E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGRAPCCSKV GLHRGSWTAR EDTLLTKYIQ AHGEGHWRSL PKKAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI TPDEDDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLSKKLRSSK  120
RVKISKDEEN SNHKVHLPKP VRVTSLISMS RNNSFESNTV SGGSGSSSGG NGESLPWPSF  180
RDIRDDKVIG VDGVDFFIGD DQGQDLVASS DPESQSHMPP TDNSLDKLYE EYLQLLERED  240
TQVQLDSFAE SLLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113122KKLRSSKRVK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.57610.0bud| fruit| inflorescence| leaf
Function -- GeneRIF ? help Back to Top
  1. VvMYBPA1 alters the phenylpropanoid pathway in tobacco floral organs, in a structure-specific fashion.
    [PMID: 28299441]
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3951450.0FQ395145.1 Vitis vinifera clone SS0AFA17YI13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001268160.11e-172MYBPA1 protein
TrEMBLA4F4L31e-170A4F4L3_VITVI; MYBPA1 protein
STRINGVIT_15s0046g00170.t011e-169(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.15e-65myb domain protein 111
Publications ? help Back to Top
  1. Bogs J,Jaffé FW,Takos AM,Walker AR,Robinson SP
    The grapevine transcription factor VvMYBPA1 regulates proanthocyanidin synthesis during fruit development.
    Plant Physiol., 2007. 143(3): p. 1347-61
    [PMID:17208963]
  2. Passeri V, et al.
    The R2R3MYB VvMYBPA1 from grape reprograms the phenylpropanoid pathway in tobacco flowers.
    Planta, 2017. 246(2): p. 185-199
    [PMID:28299441]