PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01027412001
Common NameLOC100262545, VIT_15s0048g02820
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 334aa    MW: 36695.4 Da    PI: 5.4313
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01027412001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.2e-12214259454
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  GSVIVT01027412001 214 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLADAVSYINEL 259
                        799***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.1E-4818175IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.085210259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.29E-18211272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.45E-15213263No hitNo description
PfamPF000106.1E-10214259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-17214275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-16216265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MPQEQAQAQA QAQAQPSLQE RLQFIVQSQA EWWAYAIFWQ TCNDDNGRIF LAWGDGHFQG  60
GKGMGIQALI TENPDMDGLM DGDVTDVEWF YVMSLTRCFS AGDGVPGKAL SSGSLVWLTG  120
AQELMFYNCE RAKEAQIHGI DTFVCIPTGN GVLELGSSDV IRENWGLVQQ AKSLFGSDHF  180
IGLGTRQDKK PMGNAKKEGI RGRKPRLGRD APLNHVEAER QRREKLNHRF YALRAVVPNV  240
SRMDKASLLA DAVSYINELK AKVDELESQV HKESKKVKLE MADTTDNQST TTSVDQTGPT  300
PPPPPPPPSS ATGGGFLAIP NVELVQFCIY NNV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-32151756192Transcription factor MYC3
4rqw_B1e-32151756192Transcription factor MYC3
4rs9_A1e-32151756192Transcription factor MYC3
4yz6_A1e-32151756192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4600130.0AM460013.2 Vitis vinifera contig VV78X177465.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002266775.10.0PREDICTED: transcription factor MYC2
SwissprotO230903e-72BH014_ARATH; Transcription factor bHLH14
TrEMBLA0A438IFA40.0A0A438IFA4_VITVI; Transcription factor bHLH14
TrEMBLF6I2W70.0F6I2W7_VITVI; Uncharacterized protein
STRINGVIT_15s0048g02820.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8004717
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.14e-74bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]