PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01027446001
Common NameLOC100248794, VIT_15s0048g02510
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 357aa    MW: 39767.5 Da    PI: 7.3996
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01027446001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.65.5e-14150201155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  GSVIVT01027446001 150 QRMTHIAVERNRRRQMNDHLNALRSLMPTS---YIQRGDQASIIGGAIDFVKELE 201
                        79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.84E-13148205No hitNo description
PROSITE profilePS5088815.961149200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-17149217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-15150214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-11150201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-11155206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MLQSVESPPF SPFTEPNFQA LLRLQHQKKP WGMTHLTELD SRIQARELES CITHDILEMH  60
SPVKSETKEP QHHQHSTPCL EGTSSECNQD QPNSAENGCL DTNSGSSPAW VQPQTRQKQA  120
HLSKSPPITR ERRKRKRTRP TKNKEEVESQ RMTHIAVERN RRRQMNDHLN ALRSLMPTSY  180
IQRGDQASII GGAIDFVKEL EQLLESLQAQ KRMRRSEEGG DASTNSSSSS PKIASKGLCT  240
QHRFAPDESN SAEGGRSDEF TFTADNKSAA ADIEVTVIQT HVNLKIQCPR RPGQLLKAIV  300
ALEDLSLTVL HLNITSLQST VLYSFNLKIE DDCKLGSADE VAAAVHQVFS FINGSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131136RRKRKR
2150161RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4870160.0AM487016.2 Vitis vinifera contig VV78X120140.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010661504.10.0PREDICTED: transcription factor bHLH70 isoform X2
TrEMBLF6I2Y80.0F6I2Y8_VITVI; Uncharacterized protein
STRINGVIT_15s0048g02510.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.13e-76bHLH family protein