PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01027463001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family B3
Protein Properties Length: 376aa    MW: 41085 Da    PI: 7.6562
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01027463001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.21.2e-3195199199
                        EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr 87 
                        f+kv tpsdv+k++rlv+pk++ae++    ++ + ++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+
  GSVIVT01027463001  95 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSASDKGLLLNFEDRDGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFERGvGE 186
                        89**************************99444557889************************************************66577 PP

                        .SEE..EEEEE-S CS
                 B3  88 .sefelvvkvfrk 99 
                          + +l++ ++r+
  GSVIVT01027463001 187 sGKDRLYIDWRRR 199
                        7888999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.088157IPR001471AP2/ERF domain
SMARTSM003800.0012672IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-81852IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-52054IPR016177DNA-binding domain
Gene3DG3DSA:2.40.330.102.1E-4290208IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.66E-3092199IPR015300DNA-binding pseudobarrel domain
CDDcd100179.61E-2893189No hitNo description
PfamPF023622.7E-2995199IPR003340B3 DNA binding domain
PROSITE profilePS5086314.77695200IPR003340B3 DNA binding domain
SMARTSM010192.0E-2495200IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MRRTRQFMGV APEPYRYEQQ QQQRAWLGTS EPEEEAARSY DRAALELGGP DGVTDSSRKL  60
EFVNLSLRNN EDGDGGGGCS SSVGGGVCVE REHMFDKVVT PSDVGKLNRL VIPKQHAEKY  120
FPLDSSASDK GLLLNFEDRD GKPWRFRYSY WNSSQSYVMT KGWSRFVKEK KLDAGDIVSF  180
ERGVGESGKD RLYIDWRRRP DAPDPTSLSH LHLPTQLPFS QSVRWGRLYS LPQSPNTLGG  240
GYHDYNAVTS GSGSLYYLSS SSSSHQIGAV QQGGDAPMVI NSVPVVHGKT TAKRLRLFGV  300
NMECSTPDDH PECNILPSTA IPHVTMASLS PHLPSSSLPP LQLRLFNGSP LQAVNVLAAA  360
SLGTLAGGAQ KVTEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-65902003114B3 domain-containing transcription factor NGA1
5os9_B5e-65902003114B3 domain-containing transcription factor NGA1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.252590.0root
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4248050.0AM424805.2 Vitis vinifera contig VV78X270230.10, whole genome shotgun sequence.
GenBankFQ3837810.0FQ383781.1 Vitis vinifera clone SS0ABG16YE21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002268399.10.0PREDICTED: B3 domain-containing transcription factor NGA1
SwissprotO827992e-81NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLF6I2Z80.0F6I2Z8_VITVI; Uncharacterized protein
STRINGVIT_15s0048g02370.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.15e-78B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]