PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01027467001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 129aa    MW: 14764 Da    PI: 10.0079
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01027467001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.17.5e-195012850125
                NAM  50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfy..kgrapkgektdWvmhe 125
                        k+++   ew+fFs+  kky++ ++ +r+t+ gyWk tg  +++++  ++e++g+kktLvf+   g+ +  + t Wv+he
  GSVIVT01027467001  50 KIQTYGPEWFFFSPLYKKYRKRNQLQRTTNVGYWKPTGPARDIKRGvTEEVIGTKKTLVFHmgGGHGHADVTTGWVIHE 128
                        5566677************************************99878899**********5435778888*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.3531128IPR003441NAC domain
PfamPF023653.9E-1146128IPR003441NAC domain
SuperFamilySSF1019415.36E-1955128IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MRLKCFFFPS FFPQGNALPD RPPSYDLATD SDACLYKELT PQMRSAVFLK IQTYGPEWFF  60
FSPLYKKYRK RNQLQRTTNV GYWKPTGPAR DIKRGVTEEV IGTKKTLVFH MGGGHGHADV  120
TTGWVIHE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4695541e-131AM469554.2 Vitis vinifera contig VV78X143304.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002268978.21e-22PREDICTED: NAC domain-containing protein 91-like
TrEMBLF6I2Z93e-52F6I2Z9_VITVI; Uncharacterized protein
STRINGVIT_15s0048g02340.t016e-53(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.21e-19NAC domain containing protein 50