PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01027470001

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

NAC

Protein Properties

Length: 203aa MW: 22668.8 Da PI: 6.3591

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01027470001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	156.4	1.2e-48	14	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lp+GfrFhPtdeelv+++Lk+k+ g + ++ e+i+evdi+k+ePw+Lp + +k+++ ew+fFs d ky++g+r+nr+tk+gyWk tgkd+ GSVIVT01027470001 14 LPAGFRFHPTDEELVDHHLKPKILGMDSQV-EIIPEVDICKWEPWELPgsSVIKTDDPEWFFFSLLDYKYSKGSRSNRKTKAGYWKPTGKDR 104 799**********************999.89***********6347788888****************************** PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ls ++e++g kktLvfy gr + +++t+Wv+heyr+ GSVIVT01027470001 105 DILSGtNKEVIGAKKTLVFYIGRCHAATRTNWVIHEYRA 143 9878888**************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.19E-55	10	162	IPR003441	NAC domain
PROSITE profile	PS51005	51.915	14	162	IPR003441	NAC domain
Pfam	PF02365	1.3E-25	15	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MSVGETIGAI LETLPAGFRF HPTDEELVDH HLKPKILGMD SQVEIIPEVD ICKWEPWELP 60 GSSVIKTDDP EWFFFSLLDY KYSKGSRSNR KTKAGYWKPT GKDRDILSGT NKEVIGAKKT 120 LVFYIGRCHA ATRTNWVIHE YRADIAGLPA KRAYVLCRLK RKTDENTGSD IPTPDEAVAG 180 GFSPEINFNG VLSELPIIQE TC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-39	1	162	4	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-39	1	162	4	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-39	1	162	4	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-39	1	162	4	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-39	1	162	7	168	NAC domain-containing protein 19
3swm_B	2e-39	1	162	7	168	NAC domain-containing protein 19
3swm_C	2e-39	1	162	7	168	NAC domain-containing protein 19
3swm_D	2e-39	1	162	7	168	NAC domain-containing protein 19
3swp_A	2e-39	1	162	7	168	NAC domain-containing protein 19
3swp_B	2e-39	1	162	7	168	NAC domain-containing protein 19
3swp_C	2e-39	1	162	7	168	NAC domain-containing protein 19
3swp_D	2e-39	1	162	7	168	NAC domain-containing protein 19
4dul_A	2e-39	1	162	4	165	NAC domain-containing protein 19
4dul_B	2e-39	1	162	4	165	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.25424	0.0	bud\| flower

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Induced during normal senescence. {ECO:0000269\|PubMed:18443413}.
Uniprot	TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). Expressed in guard cells (PubMed:18443413). {ECO:0000269\|PubMed:17158162, ECO:0000269\|PubMed:18443413}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269\|PubMed:17947243, ECO:0000269\|PubMed:18443413, ECO:0000269\|PubMed:22826500, ECO:0000269\|PubMed:24329768}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM423655	1e-151	AM423655.1 Vitis vinifera contig VV78X050837.6, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019081107.1	1e-137	PREDICTED: protein NTM1-like 9
Swissprot	F4JN35	5e-61	NTL9_ARATH; Protein NTM1-like 9
TrEMBL	A0A438HL34	1e-129	A0A438HL34_VITVI; Protein NTM1-like 9
STRING	VIT_15s0048g02320.t01	1e-108	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	2e-63	NAC transcription factor-like 9

Link Out ? help Back to Top
Phytozome	GSVIVT01027470001

Publications ? help Back to Top
Zheng XY, et al. Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73 [PMID:26139525] Guo T, et al. Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana. Mol Plant, 2017. 10(10): p. 1334-1348 [PMID:28943325]