PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01027472001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 219aa    MW: 24590.8 Da    PI: 6.9826
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01027472001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM149.41.7e-4691381128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lp+GfrF Ptdeelv++yL+ k+ g + e+ e+i+evd++k+ePw++p  + +k+++ ew+fFs  d ky++g+r+nrat++gyWk tg+d+
  GSVIVT01027472001   9 LPVGFRFAPTDEELVDKYLTWKILGMDSEV-EIIPEVDVCKWEPWEIPgfSVIKTDDPEWFFFSLLDYKYSNGSRSNRATNAGYWKPTGQDR 99 
                        79*************************999.99***************6447888889********************************** PP

                NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++s  ++e++g+kktLvfy+gr + + +t+Wv+hey+ 
  GSVIVT01027472001 100 GIFSGtNKEVIGTKKTLVFYRGRGRGAIRTNWVIHEYHT 138
                        ***9878888***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-535157IPR003441NAC domain
PROSITE profilePS5100550.7269157IPR003441NAC domain
PfamPF023651.8E-2310137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MIGRDLETLP VGFRFAPTDE ELVDKYLTWK ILGMDSEVEI IPEVDVCKWE PWEIPGFSVI  60
KTDDPEWFFF SLLDYKYSNG SRSNRATNAG YWKPTGQDRG IFSGTNKEVI GTKKTLVFYR  120
GRGRGAIRTN WVIHEYHTNI ASLPANRAYV LCRLKRKTDE NTESDIPTPD GDVAGGFSPE  180
INFNGVLSCQ FTCGHTLVCG SYCSHCARHQ CKGLKAFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-36815716165NO APICAL MERISTEM PROTEIN
1ut4_B8e-36815716165NO APICAL MERISTEM PROTEIN
1ut7_A8e-36815716165NO APICAL MERISTEM PROTEIN
1ut7_B8e-36815716165NO APICAL MERISTEM PROTEIN
4dul_A8e-36815716165NAC domain-containing protein 19
4dul_B8e-36815716165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.254240.0bud| flower
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Induced during normal senescence. {ECO:0000269|PubMed:18443413}.
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). Expressed in guard cells (PubMed:18443413). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:18443413}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4393721e-149AM439372.2 Vitis vinifera contig VV78X219870.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010661529.11e-125PREDICTED: protein NTM1-like 9 isoform X1
RefseqXP_019081130.11e-125PREDICTED: protein NTM1-like 9 isoform X1
SwissprotF4JN355e-61NTL9_ARATH; Protein NTM1-like 9
TrEMBLA0A438HL451e-126A0A438HL45_VITVI; Protein NTM1-like 9
STRINGVIT_15s0048g02290.t011e-106(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9281314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.12e-63NAC transcription factor-like 9
Publications ? help Back to Top
  1. Zheng XY, et al.
    Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73
    [PMID:26139525]
  2. Guo T, et al.
    Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana.
    Mol Plant, 2017. 10(10): p. 1334-1348
    [PMID:28943325]