PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01027473001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 456aa    MW: 51587.7 Da    PI: 5.3227
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01027473001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM139.22.5e-43141431128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lp+GfrFhPtdeelv+++Lk+k+ g + ++ e+i+evdi+k+ePw+Lp    +++++ ew+fFs+ +kky++g++ +ratk+gyWk tg  +
  GSVIVT01027473001  14 LPVGFRFHPTDEELVDRHLKPKILGMDSQV-EIIPEVDICKWEPWELPgFsVLQTDDLEWFFFSPLHKKYQNGSQFKRATKAGYWKPTGLGR 104
                        79*************************999.89***************6336667777********************************** PP

                NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++ls+ ++e++g++ktL fy+gr + ++ t+Wv+ +y+ 
  GSVIVT01027473001 105 DILSRtNKEVIGTRKTLNFYEGRGRAAVLTNWVIYQYQY 143
                        ****978889***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-4910165IPR003441NAC domain
PROSITE profilePS5100547.97214165IPR003441NAC domain
PfamPF023651.6E-2015142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MSVGETIGAI LETLPVGFRF HPTDEELVDR HLKPKILGMD SQVEIIPEVD ICKWEPWELP  60
GFSVLQTDDL EWFFFSPLHK KYQNGSQFKR ATKAGYWKPT GLGRDILSRT NKEVIGTRKT  120
LNFYEGRGRA AVLTNWVIYQ YQYHRSDIAS LPSKRAYVLC RLKRKKDKKT GSYIPTPDEA  180
VAGTGIHLNG PANNMTLDAG PSHHFSDIAS DIRNYQVEEM TSDEDPQLPG LLNDIPFTPL  240
DSDWFSDTEQ GLDLDLPSPS GFNNSYGNMQ FEDGVDTEFA DSLIVDPDEY HCEGLTGQRI  300
SAVDSWNLNH GFAKDRAEYG SVIDLLQNKN PIREFKKDSE VTEKANPNLS SIWNESVGMN  360
QKGSFSSPET ASASHEPSST PAFAMRYQPA SHNQKNSHSE EASRKRSMCV FFWLHGDILN  420
SRFCKNSLYI VGHVGKCFIW SEDYFLWIYN YVCCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-3011664166NO APICAL MERISTEM PROTEIN
1ut4_B7e-3011664166NO APICAL MERISTEM PROTEIN
1ut7_A7e-3011664166NO APICAL MERISTEM PROTEIN
1ut7_B7e-3011664166NO APICAL MERISTEM PROTEIN
3swm_A8e-3011667169NAC domain-containing protein 19
3swm_B8e-3011667169NAC domain-containing protein 19
3swm_C8e-3011667169NAC domain-containing protein 19
3swm_D8e-3011667169NAC domain-containing protein 19
3swp_A8e-3011667169NAC domain-containing protein 19
3swp_B8e-3011667169NAC domain-containing protein 19
3swp_C8e-3011667169NAC domain-containing protein 19
3swp_D8e-3011667169NAC domain-containing protein 19
4dul_A7e-3011664166NAC domain-containing protein 19
4dul_B7e-3011664166NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.254240.0bud| flower
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4393721e-156AM439372.2 Vitis vinifera contig VV78X219870.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010661528.10.0PREDICTED: protein NTM1-like 9
TrEMBLF6I3020.0F6I302_VITVI; Uncharacterized protein
STRINGVIT_15s0048g02300.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.12e-51NAC transcription factor-like 9