PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01027720001
Common NameLOC100258069, VIT_05s0049g00080
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 203aa    MW: 22421 Da    PI: 6.6556
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01027720001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.8e-055476123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C+ C++ F++   L  H+++H
  GSVIVT01027720001 54 YTCSFCKREFRSAQALGGHMNVH 76
                       9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.29E-65180No hitNo description
PfamPF139121.3E-65477IPR007087Zinc finger, C2H2
SMARTSM003550.00385476IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.245481IPR007087Zinc finger, C2H2
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MSNKLKDHSI GCRAVEDCNI SYNHNTIKDS WNCYGSGSHD EDDLGGYSWP PRSYTCSFCK  60
REFRSAQALG GHMNVHRRDR ARLRRSPPRD DQYTIPNLNL KPNPNLSTPS PPSLPTRLPA  120
FTCPLPSLAA SPFSSLSSPS SASPSELNAA QSFSGVEEFN GVNQEDECKV LKMAEFVRLD  180
LKIGLPSDLK EDLDLELRLG YS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-144976229superman protein
2l1o_A4e-144976229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4353570.0AM435357.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X117801.19, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002280772.11e-148PREDICTED: transcriptional regulator SUPERMAN
TrEMBLF6H8H21e-147F6H8H2_VITVI; Uncharacterized protein
STRINGVIT_05s0049g00080.t011e-147(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.13e-19C2H2 family protein