PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01027810001
Common NameVIT_05s0049g01010
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 145aa    MW: 16408.9 Da    PI: 10.7647
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01027810001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding612.6e-191461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd++lv  v+++G g+W++ ++  g+ R++k+c++rw +yl
  GSVIVT01027810001 14 KGPWTPEEDKILVAHVQKHGHGNWRALPKQAGLLRCGKSCRLRWVNYL 61
                       79******************************99************97 PP
2Myb_DNA-binding52.98.5e-1767111147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg+++ eE++ ++d++++lG++ W++Ia++++ gRt++++k+ w++ 
  GSVIVT01027810001  67 RGNFSREEEDAIIDLHEKLGNR-WSAIAARLP-GRTDNEIKNVWHTN 111
                        89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-27564IPR009057Homeodomain-like
PROSITE profilePS5129417.08961IPR017930Myb domain
SuperFamilySSF466891.16E-3210108IPR009057Homeodomain-like
SMARTSM007174.6E-151363IPR001005SANT/Myb domain
PfamPF002491.3E-171461IPR001005SANT/Myb domain
CDDcd001678.20E-121661No hitNo description
PROSITE profilePS5129424.75262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-2665117IPR009057Homeodomain-like
SMARTSM007171.1E-1466114IPR001005SANT/Myb domain
PfamPF002492.4E-1567111IPR001005SANT/Myb domain
CDDcd001672.69E-1069111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MARSPCCDKM GLKKGPWTPE EDKILVAHVQ KHGHGNWRAL PKQAGLLRCG KSCRLRWVNY  60
LRPDIKRGNF SREEEDAIID LHEKLGNRWS AIAARLPGRT DNEIKNVWHT NLKKRLKKKL  120
ATPNSKGHST AAASKCDSGT WRYT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-281211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC5141101e-126KC514110.1 Vitis vinifera cultivar Shiraz R2R3 MYB15 transcription factor (myb15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281274.12e-99PREDICTED: myb-related protein Myb4
SwissprotQ7XBH45e-78MYB4_ORYSJ; Transcription factor MYB4
TrEMBLD7SZG71e-102D7SZG7_VITVI; Uncharacterized protein
STRINGVIT_05s0049g01010.t011e-103(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-74myb domain protein 15
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]