PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01027949001
Common NameVIT_05s0049g02260
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 258aa    MW: 29792.6 Da    PI: 9.3395
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01027949001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.76.5e-191764148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd ll ++vk++G g+W+++ar  g++R +k+c++rw +yl
  GSVIVT01027949001 17 KGPWTAEEDRLLTEYVKLHGEGRWNSVARLAGLRRNGKSCRLRWVNYL 64
                       79********************************************97 PP
2Myb_DNA-binding52.31.3e-1670114147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  GSVIVT01027949001  70 RGQITPHEENIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 114
                        7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.1041268IPR017930Myb domain
SuperFamilySSF466892.02E-3014111IPR009057Homeodomain-like
SMARTSM007172.2E-161666IPR001005SANT/Myb domain
PfamPF002495.5E-171764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-241871IPR009057Homeodomain-like
CDDcd001671.29E-111964No hitNo description
SMARTSM007177.5E-1569117IPR001005SANT/Myb domain
PROSITE profilePS5129418.75569119IPR017930Myb domain
PfamPF002495.1E-1470114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-2472118IPR009057Homeodomain-like
CDDcd001672.80E-1074115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MMAGHLGWGI IEEGWRKGPW TAEEDRLLTE YVKLHGEGRW NSVARLAGLR RNGKSCRLRW  60
VNYLRPDLKR GQITPHEENI ILELHARWGN RWSTIARSLP GRTDNEIKNY WRTHFKKKGK  120
LPSDKSEKAK TRLLRKQQFY QQQQQQQQQQ QQQQQQQLNQ LDLKRIMALL DQPDIGDTPM  180
AQARQDLGSC IYSTHHAAEE HGYVHLPIPN ADVSTQESSS EDMLWDGLWN LDDFHGNLSA  240
ACAASKASLH HLVAPFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-261711827127MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4743310.0AM474331.1 Vitis vinifera contig VV79X001023.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282421.10.0PREDICTED: protein ODORANT1
TrEMBLA0A438I0560.0A0A438I056_VITVI; Transcription factor MYB2
STRINGVIT_05s0049g02260.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.17e-85myb domain protein 305