PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01028050001
Common NameVIT_07s0005g00820
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 260aa    MW: 29171.7 Da    PI: 7.9203
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01028050001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-1975123355
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+G+r+++ +g+W+AeIrdps+     r++lg+f taeeAa+a+++ ++k++g
  GSVIVT01028050001  75 YRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTFNTAEEAARAYDREARKIRG 123
                        9*******.**********965...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.60474131IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-3274132IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-2274132IPR016177DNA-binding domain
SMARTSM003805.1E-3974137IPR001471AP2/ERF domain
PRINTSPR003676.1E-127586IPR001471AP2/ERF domain
CDDcd000184.07E-3275132No hitNo description
PfamPF008475.6E-1275123IPR001471AP2/ERF domain
PRINTSPR003676.1E-1297113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MCGGAIISDF IPRNRNRRDP APDLWPDSFF AKPDGCEYDL GRFSQKGLPN LKRSQPILDD  60
EPEVKPAKRV RKNLYRGIRQ RPWGKWAAEI RDPSKGVRVW LGTFNTAEEA ARAYDREARK  120
IRGKKAKVNF PNEDDDYTEN HQNHRALPTR WNSNPSISFP SNGFNTKACV GKVKNQKENQ  180
TETVTEAEKE EMEVQKLSEE LMAYESVMKF YQIPYLDGNS AAVPNAAQEN AGACGGAAME  240
ALWSFDEFAV APQPTSAAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-2275131360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-2275131663ATERF1
3gcc_A7e-2275131663ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.8430.0bud| cell culture| fruit| pedicel| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3793770.0FQ379377.1 Vitis vinifera clone SS0AEB10YJ24.
GenBankFQ3815890.0FQ381589.1 Vitis vinifera clone SS0ABP1YD10.
GenBankFQ3834480.0FQ383448.1 Vitis vinifera clone SS0ABG1YN24.
GenBankFQ3866560.0FQ386656.1 Vitis vinifera clone SS0AEB29YD04.
GenBankFQ3914650.0FQ391465.1 Vitis vinifera clone SS0AP1YL16.
GenBankFQ3923650.0FQ392365.1 Vitis vinifera clone SS0AFA5YP07.
GenBankFQ3924340.0FQ392434.1 Vitis vinifera clone SS0AFA5YK23.
GenBankFQ3939840.0FQ393984.1 Vitis vinifera clone SS0AFA23YD11.
GenBankFQ3950890.0FQ395089.1 Vitis vinifera clone SS0AFA17YM22.
GenBankFQ3965000.0FQ396500.1 Vitis vinifera clone SS0AEB9YL15.
GenBankFQ3970350.0FQ397035.1 Vitis vinifera clone SS0AEB8YB03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272464.10.0PREDICTED: ethylene-responsive transcription factor ERF073
TrEMBLD7U2C60.0D7U2C6_VITVI; Uncharacterized protein
STRINGVIT_07s0005g00820.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.11e-39ERF family protein