PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01028129001
Common NameLOC100262306, VIT_07s0005g01520
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 243aa    MW: 27548.6 Da    PI: 6.2395
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01028129001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY962.6e-3047105259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+ver+++d ++++itY+++Hnh+
  GSVIVT01028129001  47 SDFWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERCRTDASMLIITYTSSHNHP 105
                        699***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-3237107IPR003657WRKY domain
SuperFamilySSF1182904.97E-2643107IPR003657WRKY domain
SMARTSM007746.2E-3646106IPR003657WRKY domain
PROSITE profilePS5081131.147107IPR003657WRKY domain
PfamPF031062.6E-2548105IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MDGSVKVSKE LKHETQASKK RRVVQKTVVT VRIEANVGKQ KNEGPPSDFW SWRKYGQKPI  60
KGSPYPRGYY RCSTSKGCSA KKQVERCRTD ASMLIITYTS SHNHPGPDLS TTPNSLNQPK  120
DPQTQPIEET PTTPKEDHQP QQPITMASDE DASEDHFHYF QSTISHEEDP FKVNLEKTHD  180
SLGVVFDEQP LAYPHLMTFS TPKSEENDFF DELEELPTSS SFTSFMRSGF NFFDDRILVL  240
PS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B8e-22471071779Disease resistance protein RRS1
5w3x_D8e-22471071779Disease resistance protein RRS1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.192890.0inflorescence
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4598470.0AM459847.2 Vitis vinifera contig VV78X063071.16, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002270750.30.0PREDICTED: probable WRKY transcription factor 65
TrEMBLD7U2J01e-180D7U2J0_VITVI; Uncharacterized protein
STRINGVIT_07s0005g01520.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-34WRKY DNA-binding protein 35