PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01028238001
Common NameVIT_07s0005g02510
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 201aa    MW: 20892.5 Da    PI: 10.1203
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01028238001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.49.4e-171964555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                       h+  E+rRRdriN+++  L+el+P++     kK++K++iL +A++Y+k Lq
  GSVIVT01028238001 19 HSLSEKRRRDRINKKMRSLQELIPNC-----KKVDKISILDEAIDYLKTLQ 64
                       8999**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.25E-181068No hitNo description
Gene3DG3DSA:4.10.280.106.8E-201172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.5681463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-191883IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-141964IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-162069IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MSTRGGSAGS KRNRSAEGHS LSEKRRRDRI NKKMRSLQEL IPNCKKVDKI SILDEAIDYL  60
KTLQLQVQVM SMGAGMCMAP VMIPAVLQQI QAAHLPHFSP MGMGMGMGMG MGLGLGLGLG  120
LGCSPEQFPS PPILGAAALS GIAGTAPQML GHPGQVLPMS LSSAPFIPLH AGSLTQSVLV  180
PSVPKDIHPV EHPGSSPSSN *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4312930.0AM431293.1 Vitis vinifera contig VV78X114116.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002273729.11e-139PREDICTED: transcription factor PIF3
RefseqXP_010652329.11e-139PREDICTED: transcription factor PIF3
RefseqXP_010652330.11e-139PREDICTED: transcription factor PIF3
RefseqXP_019076835.11e-139PREDICTED: transcription factor PIF3
SwissprotQ0JNI96e-40PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBLD7U2T11e-139D7U2T1_VITVI; Uncharacterized protein
STRINGVIT_07s0005g02510.t011e-140(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.29e-33phytochrome interacting factor 3
Publications ? help Back to Top
  1. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]