PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01028328001
Common NameVIT_07s0005g03340
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 234aa    MW: 26684.1 Da    PI: 6.8509
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01028328001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.29.2e-191461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd++lv++++++G g+W++ ++  g+ R++k+c++rw +yl
  GSVIVT01028328001 14 KGPWTPEEDQILVNYIHLYGHGNWRALPKQAGLLRCGKSCRLRWTNYL 61
                       79******************************99************97 PP
2Myb_DNA-binding55.61.2e-1767112148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg++T eE+e +++++++lG++ W++Ia++++ gRt++++k+ w+++l
  GSVIVT01028328001  67 RGNFTSEEEETIIELHERLGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 112
                        89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-26564IPR009057Homeodomain-like
PROSITE profilePS5129418.077961IPR017930Myb domain
SuperFamilySSF466898.3E-3210108IPR009057Homeodomain-like
SMARTSM007172.8E-151363IPR001005SANT/Myb domain
PfamPF002493.0E-171461IPR001005SANT/Myb domain
CDDcd001674.14E-121661No hitNo description
PROSITE profilePS5129425.49862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-2765117IPR009057Homeodomain-like
SMARTSM007178.3E-1566114IPR001005SANT/Myb domain
PfamPF002495.3E-1667112IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGRAPCCEKM GLKKGPWTPE EDQILVNYIH LYGHGNWRAL PKQAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF TSEEEETIIE LHERLGNRWS AIAAKLPGRT DNEIKNVWHT HLKKRLKHNH  120
ATPPPKRHSL DASHVEKQQN PISSATNSRS ESLGYGPVLS PQQSFSDISS AATTTTTATM  180
SDITTPCIKV DSLEEFPEMD ENFWSEVLTY DMDMEFWYNI FTRSGELHEL SEI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-281211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.173670.0cell culture| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Fades out in old roots and leaves. {ECO:0000269|PubMed:24415840}.
UniprotTISSUE SPECIFICITY: Expressed in imbibed seeds, hypocotyls, cotyledons, roots, seedlings, siliques and flowers. {ECO:0000269|PubMed:24415840}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1814240.0EU181424.1 Vitis vinifera R2R3 Myb14 transcription factor (MYB14) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001268132.11e-146R2R3 Myb14 transcription factor
SwissprotQ9SJX85e-86MYB14_ARATH; Transcription factor MYB14
TrEMBLF6HZJ91e-168F6HZJ9_VITVI; Uncharacterized protein
STRINGVIT_07s0005g03340.t011e-169(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-76myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]