PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01028683001

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

Trihelix

Protein Properties

Length: 220aa MW: 25411.8 Da PI: 10.1983

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01028683001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	72.2	9.2e-23	25	112	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W++qe+ +Li+a++e++ +l+rg+lk+ +Weev+ + ++s++qC++k+e+l+kry+++k++ + + +ss++pyf+ ++ GSVIVT01028683001 25 WSHQETTHLIQAYQEKWYSLKRGQLKASQWEEVAVTVaarcNYDEPSKSATQCRHKIEKLRKRYRAEKQRIVIG-AAASSSWPYFHLMD 112 ******************************9988854335556699*******************998.666779***998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.0E-21	24	114	No hit	No description
PROSITE profile	PS50090	6.33	24	85	IPR017877	Myb-like domain
SMART	SM00595	1.3E-7	32	119	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MATPSPPPPS SSPPNRPKKA QPLPWSHQET THLIQAYQEK WYSLKRGQLK ASQWEEVAVT 60 VAARCNYDEP SKSATQCRHK IEKLRKRYRA EKQRIVIGAA ASSSWPYFHL MDSLERGPLP 120 ISAQPMSVLK YEKAYPYSHN CKPNDDNVGN DDYSNSSNDE DSGALKTSRR RRGRWWWREG 180 RAWFGSRAKH LTSFSGRFCF QEELIFIVII SFLFFIRML*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM451800	0.0	AM451800.2 Vitis vinifera contig VV78X191872.2, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010652521.1	1e-122	PREDICTED: trihelix transcription factor ASIL1
TrEMBL	A0A438IMR0	1e-121	A0A438IMR0_VITVI; Trihelix transcription factor ASIL2
TrEMBL	F6I024	1e-121	F6I024_VITVI; Uncharacterized protein
STRING	VIT_07s0005g06670.t01	1e-122	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP4059	11	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	3e-29	Trihelix family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01028683001