PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01028823001

Common Name

VIT_16s0050g01480

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

WRKY

Protein Properties

Length: 183aa MW: 20505.6 Da PI: 5.1017

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01028823001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	84.9	7.2e-27	11	69	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC++ C+++k+ve s+++p+ ++ Y g+H h GSVIVT01028823001 11 RDSWSWRKYGQKPIKGSPYPRNYYRCSTLkACSARKQVELSQDNPEEYIVSYIGDHIHA 69 79**********************99889************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	27.6	5	71	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	3.7E-27	6	71	IPR003657	WRKY domain
SuperFamily	SSF118290	1.96E-24	7	71	IPR003657	WRKY domain
SMART	SM00774	5.2E-30	10	70	IPR003657	WRKY domain
Pfam	PF03106	5.6E-23	12	68	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009010	anatomy	seed
PO:0025501	developmental stage	fruit formation stage

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MMRINAKTLS RDSWSWRKYG QKPIKGSPYP RNYYRCSTLK ACSARKQVEL SQDNPEEYIV 60 SYIGDHIHAR PTTRRSLAGT ARNPPPAAPT SVTDLSPTTP LTAHYNNKTQ KPDTENENEN 120 SEPMFEDEEE EEEEADILTT NMQMSEETFM AMHVLNSRDS QPTIAEPHSP AKNSINAAGS 180 SD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-15	9	71	16	77	Probable WRKY transcription factor 4
2lex_A	4e-15	9	71	16	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM458193	0.0	AM458193.1 Vitis vinifera contig VV78X207471.5, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010662789.1	1e-133	PREDICTED: WRKY transcription factor 22
Swissprot	Q9FLX8	3e-33	WRK27_ARATH; Probable WRKY transcription factor 27
TrEMBL	E0CUS7	1e-133	E0CUS7_VITVI; Uncharacterized protein
STRING	VIT_16s0050g01480.t01	1e-134	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	4e-35	WRKY DNA-binding protein 27

Link Out ? help Back to Top
Phytozome	GSVIVT01028823001

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Mukhtar MS,Liu X,Somssich IE Elucidating the role of WRKY27 in male sterility in Arabidopsis. Plant Signal Behav, 2017. 12(9): p. e1363945 [PMID:28816593]