PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01029219001
Common NameLOC100259877, VIT_11s0052g00840
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family AP2
Protein Properties Length: 465aa    MW: 50445.6 Da    PI: 9.2483
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01029219001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.32.6e-15103162155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  GSVIVT01029219001 103 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 162
                        57*******************666664477446*************************98 PP
2AP247.44.7e-15205256155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  GSVIVT01029219001 205 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 256
                        57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-17103172IPR016177DNA-binding domain
PfamPF008472.5E-12103162IPR001471AP2/ERF domain
CDDcd000182.16E-22103172No hitNo description
PROSITE profilePS5103219.23104170IPR001471AP2/ERF domain
SMARTSM003804.6E-30104176IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-16104171IPR001471AP2/ERF domain
PRINTSPR003671.8E-6105116IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-18205266IPR016177DNA-binding domain
CDDcd000181.02E-24205266No hitNo description
PfamPF008475.8E-10205256IPR001471AP2/ERF domain
SMARTSM003801.5E-33206270IPR001471AP2/ERF domain
PROSITE profilePS5103219.045206264IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-18206265IPR001471AP2/ERF domain
PRINTSPR003671.8E-6246266IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MASNHNWLAF SLSNNSLPSD SSQLCLFEAL SASTHHNGGV DREQGFPDRG GSDLIGGPKL  60
EDFLAASFLR GFSSEQSEAQ KQLALTPEPS PKKSVDTFGQ RTSIYRGVTR HRWTGRYEAH  120
LWDNSCRREG QSRKGRQVYL GGYDKEEKAA RAYDLAALKY WGPTTTTNFP VSNYEKELEN  180
MKNMTRQEFV ASLRRKSSGF SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ  240
EEAAEAYDIA AIKFRGLNAV TNFDMSRYDV KSIANSNLPI GGAITTGKPK TSPSDSASDS  300
GSRRSEEQVQ VLSGPSNTLI FSKPLKQDHH QSVDYWSVLG YQASTLNSVV KNPILESSFP  360
FQTSSNLTMD FSTASAGFLC NGGGYIQQQQ SNSSSSTASS SNSIPYATPV NGLNSSTSYE  420
VSGYNSWAAA TAAAAAAAAA PSLHSFQAAK PSLSVFQTPI FGME*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.158700.0fruit| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Present in inflorescence meristem and later in young floral mersitems. Expressed in sepal, petal, stamen and carpel primordia. In petal, progressively confined to petal margin and epidermal cells. Restricted to sporogenous tissue in the stamen and to the medial ridge of the carpel. Present in tissues that develop from this ridge, such as placenta and ovule primordia. In ovules, first expressed in distal part of the funiculus and the outer integument, before being confined to the funiculus. {ECO:0000269|PubMed:15988559}.
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4367260.0AM436726.2 Vitis vinifera contig VV78X141375.2, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002268683.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-146AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLF6GXH10.0F6GXH1_VITVI; Uncharacterized protein
STRINGVIT_11s0052g00840.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-134AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]