PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01029311001
Common NameLOC100244514, VIT_11s0052g00100
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 245aa    MW: 27522.2 Da    PI: 5.1169
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01029311001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72e-135496754
                       HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                         Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YI++L
  GSVIVT01029311001 54 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIQDL 96
                       57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.6534796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.11E-1848111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.24E-1350101No hitNo description
Gene3DG3DSA:4.10.280.101.9E-1753112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-1553102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-115496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDNTEEFKNY WETNMFLQSE EFDSWGGLDE AFSGYYDSSS PDGAASSAAS KNIVSERNRR  60
KKLNERLFAL RAVVPNISKM DKASIIKDAI DYIQDLHEQE RRIQAEISEL ESGKSKKSPP  120
GYEFDQEIPV LVSKSKKKRT QHCYDSGGSR VSPIEVLELR VVYMGEKTVV VSLTCSKRTD  180
TMVKLCEVFE SLKLKIITAN ITAFSGRLLK TVFVEADEEE KDVLKIKIET AIAALNDPQS  240
PMSI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.71150.0bud| flower| fruit| inflorescence| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3861390.0FQ386139.1 Vitis vinifera clone SS0AEB2YO13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002263999.10.0PREDICTED: transcription factor bHLH35
SwissprotQ2HIV96e-99BH035_ARATH; Transcription factor bHLH35
TrEMBLD7SQH91e-179D7SQH9_VITVI; Uncharacterized protein
STRINGVIT_11s0052g00100.t011e-180(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27531332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-91bHLH family protein