PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01029696001

Common Name

LOC100250466, VIT_12s0055g00420

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

bZIP

Protein Properties

Length: 143aa MW: 16269.5 Da PI: 10.4471

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01029696001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	51.2	2.8e-16	61	118	4	60
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL.kkeleelkkevaklk 60 +r+rr++kNRe+A rsR+RK+a++ eLe v Le+eN +L ++e+e+ k+ +++l GSVIVT01029696001 61 QQRQRRMIKNRESAARSRERKQAYTVELESLVTHLEEENARLlREEAEQSKERYKQLM 118 68***********************************9954899***9999985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.4E-13	58	122	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.07	60	112	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.1E-15	60	119	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.5E-11	62	113	No hit	No description
CDD	cd14707	6.13E-18	62	109	No hit	No description
Gene3D	G3DSA:1.20.5.170	6.3E-15	63	121	No hit	No description
PROSITE pattern	PS00036	0	65	80	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MTLEDFLAKA GAVREEDAPQ MQAQGVDGAM VAFGNGIDGR VTGAGRGKRR AVEEPVDKAT 60 QQRQRRMIKN RESAARSRER KQAYTVELES LVTHLEEENA RLLREEAEQS KERYKQLMEN 120 LVPVVEKRRP PRVLRRVQSV LW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM443295	1e-105	AM443295.1 Vitis vinifera contig VV78X039579.5, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002266344.1	2e-82	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5
Swissprot	Q0JHF1	8e-42	BZP12_ORYSJ; bZIP transcription factor 12
TrEMBL	F6H1R6	5e-81	F6H1R6_VITVI; Uncharacterized protein
STRING	VIT_12s0055g00420.t01	8e-82	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP8662	7	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44080.1	2e-29	bZIP family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01029696001
Entrez Gene	100250466

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]