PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01029709001
Common NameLOC100243491, VIT_12s0055g00510, VITISV_006066
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 193aa    MW: 21978.4 Da    PI: 4.9228
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01029709001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM129.92e-4081261128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrF Ptdeelvv++L++k++  +++  +vi+++d+y ++Pw+L+ k+ ae ++wy+Fs+r         +nr+t++gyWk+ g d+++
  GSVIVT01029709001   8 LPPGFRFYPTDEELVVHFLHRKAALLPCHP-DVIPDLDLYPYDPWELDGKALAEGNQWYYFSRRT--------QNRSTNNGYWKTLGIDEPI 90 
                        79*************************999.99**************977778899******984........5899*************** PP

                NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +s++g+ vg+kk +vfy g+ap+g k++W+m+eyrl
  GSVIVT01029709001  91 MSSGGKRVGMKKYMVFYIGEAPSGIKSSWIMQEYRL 126
                        **********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-506159IPR003441NAC domain
PROSITE profilePS5100547.1078161IPR003441NAC domain
PfamPF023651.6E-239126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MGDHNFNLPP GFRFYPTDEE LVVHFLHRKA ALLPCHPDVI PDLDLYPYDP WELDGKALAE  60
GNQWYYFSRR TQNRSTNNGY WKTLGIDEPI MSSGGKRVGM KKYMVFYIGE APSGIKSSWI  120
MQEYRLSDSG SSSSSGRSSS KRRGHSKIDY SKWVVCRVSE RNSDDDDDGT ELSYLDEVFL  180
SLDDLDEISL PN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-44516314167NO APICAL MERISTEM PROTEIN
1ut4_B1e-44516314167NO APICAL MERISTEM PROTEIN
1ut7_A1e-44516314167NO APICAL MERISTEM PROTEIN
1ut7_B1e-44516314167NO APICAL MERISTEM PROTEIN
3swm_A1e-44516317170NAC domain-containing protein 19
3swm_B1e-44516317170NAC domain-containing protein 19
3swm_C1e-44516317170NAC domain-containing protein 19
3swm_D1e-44516317170NAC domain-containing protein 19
3swp_A1e-44516317170NAC domain-containing protein 19
3swp_B1e-44516317170NAC domain-containing protein 19
3swp_C1e-44516317170NAC domain-containing protein 19
3swp_D1e-44516317170NAC domain-containing protein 19
4dul_A1e-44516314167NAC domain-containing protein 19
4dul_B1e-44516314167NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4781991e-154AM478199.2 Vitis vinifera contig VV78X179772.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002266820.11e-141PREDICTED: NAC domain-containing protein 104
SwissprotQ8GWK62e-82NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A438E2W21e-139A0A438E2W2_VITVI; NAC domain-containing protein 104
TrEMBLA5C0V81e-139A5C0V8_VITVI; Uncharacterized protein
STRINGVIT_12s0055g00510.t011e-140(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP45101024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.17e-82xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]