PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01029942001
Common NameVIT_08s0056g01200
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WOX
Protein Properties Length: 237aa    MW: 25875.9 Da    PI: 6.7833
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01029942001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.92.2e-151777257
                       T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       r+R+t+++eq+ +Le+ F++   +p ++e  ++ k l    ++ +++V++WFqNrR + ++
  GSVIVT01029942001 17 RSRWTPKPEQIIILESIFNSgMVNPPKDETVRIRKLLepygSVGDANVFYWFQNRRSRSRR 77
                       89*****************99*************************************997 PP
2Wus_type_Homeobox106.12.2e-341679265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le yG ++d+NVfyWFQNr++R+r++q
  GSVIVT01029942001 16 VRSRWTPKPEQIIILESIFNSGMVNPPKDETVRIRKLLEPYGSVGDANVFYWFQNRRSRSRRRQ 79
                       589***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.3531378IPR001356Homeobox domain
SuperFamilySSF466898.55E-141384IPR009057Homeodomain-like
SMARTSM003891.3E-41582IPR001356Homeobox domain
PfamPF000464.4E-131777IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.3E-81782IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048830Biological Processadventitious root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MEDRGQDHGL ERNEPVRSRW TPKPEQIIIL ESIFNSGMVN PPKDETVRIR KLLEPYGSVG  60
DANVFYWFQN RRSRSRRRQR QIQASLAGDR GAQAHAGGAI HYQSNLMPPS AFVPSSSSCL  120
VGSSSSCGGM NDDGVDNLFS FSGQVGLQEM ENSSGVTSTL CPSNTSNLHY QSGCVTVFIN  180
GVPTEVPKGS FDMKAMFGQD FVLVHSSGVP VPFNEFGFSM QSLQHGESYF LVSIAR*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00330DAPTransfer from AT3G03660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4352070.0AM435207.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X265020.6, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019077126.11e-173PREDICTED: WUSCHEL-related homeobox 11
SwissprotQ6X7J32e-71WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBLA0A438HZJ01e-174A0A438HZJ0_VITVI; WUSCHEL-related homeobox 11
TrEMBLD7TL391e-174D7TL39_VITVI; Uncharacterized protein
STRINGVIT_08s0056g01200.t011e-175(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP46971222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03660.11e-70WUSCHEL related homeobox 11
Publications ? help Back to Top
  1. Hu X,Xu L
    Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis.
    Plant Physiol., 2016. 172(4): p. 2363-2373
    [PMID:27784768]
  2. Sheng L, et al.
    Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture.
    Development, 2017. 144(17): p. 3126-3133
    [PMID:28743799]
  3. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]
  4. Baesso B, et al.
    Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana.
    Plant Biol (Stuttg), 2018. 20(3): p. 426-432
    [PMID:29450949]