PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01029979001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family LBD
Protein Properties Length: 259aa    MW: 27863.7 Da    PI: 6.2252
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01029979001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601261.8e-39341351101
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                        +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+
  GSVIVT01029979001  34 PCGACKFLRRKCVSGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQ 125
                        7***********************9989**************************************************************** PP

             DUF260  92 aelallkeel 101
                        aela+++++l
  GSVIVT01029979001 126 AELAMVQAQL 135
                        ******9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.8133135IPR004883Lateral organ boundaries, LOB
PfamPF031953.9E-3934132IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MIFSCLVGVG KRPTGMVEDV VEAVAVTSLS PAAPCGACKF LRRKCVSGCI FAPHFGSDQG  60
AARFAAVHKV FGASNVSKLL LHIPVNRRHD AVVTISYEAQ ARLSDPVYGC VSTILALQQQ  120
VASLQAELAM VQAQLINSRF AVANAFQNSQ QQQQHQIAVL QPAYSNNSTA SNNLINVGSF  180
TSNFDIASET APSSHSLEPL QLSQPSQDED EDEEESQNPV IVLSCIKDNS KILSLERITR  240
MCLLFPIPTF SLSYSTMC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-37251412115LOB family transfactor Ramosa2.1
5ly0_B2e-37251412115LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4305340.0AM430534.1 Vitis vinifera contig VV78X033883.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002271115.11e-154PREDICTED: LOB domain-containing protein 20
SwissprotQ9SRV38e-79LBD20_ARATH; LOB domain-containing protein 20
TrEMBLF6HMP41e-153F6HMP4_VITVI; Uncharacterized protein
STRINGVIT_08s0056g01650.t011e-154(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40515100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.12e-62LOB domain-containing protein 20