PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01030075001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family SAP
Protein Properties Length: 461aa    MW: 49997.3 Da    PI: 6.9285
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01030075001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP783.31.4e-23814601455
                SAP   1 mssssssssseseegseggeggdass.gesegpsssrqraanevwpePflealatqvaidasrslGrlaaasalanvfqvcstwravsrsdl 91 
                        msssssssss+s+++++g+ gg+ ++ g++egpsssr+r+ n+vwpePf+eala+qvaidasrs+Grlaaa+alanvfqvcstwravsrsdl
  GSVIVT01030075001   1 MSSSSSSSSSSSSSSQDGEVGGGGGGgGDFEGPSSSRRRSGNGVWPEPFVEALASQVAIDASRSIGRLAAAPALANVFQVCSTWRAVSRSDL 92 
                        9999999999999999998877655449**************************************************************** PP

                SAP  92 lwqrltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaGfadGavrlfdletrlhv 183
                        lw++l+rriW r+++l+dtWree+iyrhrta+nfr+rry+y+tl+fdpa+v++  +a+alsCrclalsd +la+Gf+dG+vrlfdl+trlhv
  GSVIVT01030075001  93 LWRNLCRRIWGRARRLHDTWREEFIYRHRTAMNFRNRRYNYTTLDFDPAYVSSG-TATALSCRCLALSDFHLAVGFEDGTVRLFDLATRLHV 183
                        ***************************************************997.77*********************************** PP

                SAP 184 stflpqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgag....aaaarrallGdvvndGalvdfaGsgrWwvGlyaGvpGrafhi 271
                        st+lp+h+ ++G+fsravsGi++s++rlvfa+l+Gd++va++d+++    ++++r+++lG+ ++dGalvdfaG++rWwvGlyaG+pG+af+i
  GSVIVT01030075001 184 STCLPHHNVLMGPFSRAVSGIILSRARLVFASLHGDVNVAALDIVApldpVIPTRHVHLGQGASDGALVDFAGCSRWWVGLYAGAPGQAFRI 275
                        ********************************************9999999***************************************** PP

                SAP 272 WdaeteelvfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreeeerrGlivssldasneayvvvdsr 363
                        Wd+eteelvfvGG+ltdPeavmGWhm+tel+++vGrvrvt++e+avaCts+r++vf+lrn g+v++e+e++ G+iv+slda+neayv+vd r
  GSVIVT01030075001 276 WDGETEELVFVGGTLTDPEAVMGWHMFTELADFVGRVRVTSQESAVACTSRRVIVFNLRNGGNVHGEQEFAPGFIVGSLDANNEAYVIVDGR 367
                        ******************************************************************************************** PP

                SAP 364 Gvatvrrvenleevcrfrvrg.aqrgvlgCvnggyalvyaggvlrvWeiekkegylyslrervg.evnalvaddrhvavsssdgtihlldfg 453
                        Gva+vrr+enleevcrf v g +qr+vlgC+nggyal+++g+v+r+We+e+ + yly+lrer+  ++ a+vaddr+va+++sd+tihl+dfg
  GSVIVT01030075001 368 GVASVRRAENLEEVCRFVVGGtSQRRVLGCMNGGYALMCIGSVIRAWEVERGV-YLYNLRERTLgDLVAMVADDRYVAACNSDTTIHLWDFG 458
                        *********************9*****************************88.********966*************************** PP

                SAP 454 aq 455
                        aq
  GSVIVT01030075001 459 AQ 460
                        97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.1280.501.5E-872146No hitNo description
SuperFamilySSF813834.09E-1073121IPR001810F-box domain
SuperFamilySSF509988.24E-13149255IPR011047Quinoprotein alcohol dehydrogenase-like superfamily
Gene3DG3DSA:2.130.10.106.7E-7154213IPR015943WD40/YVTN repeat-like-containing domain
Gene3DG3DSA:2.130.10.106.8E-4273337IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509988.24E-13284457IPR011047Quinoprotein alcohol dehydrogenase-like superfamily
Gene3DG3DSA:2.130.10.106.8E-4377457IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF813834.09E-10441456IPR001810F-box domain
PROSITE patternPS006780443457IPR019775WD40 repeat, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009908Biological Processflower development
GO:0030163Biological Processprotein catabolic process
GO:0046622Biological Processpositive regulation of organ growth
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MSSSSSSSSS SSSSSQDGEV GGGGGGGGDF EGPSSSRRRS GNGVWPEPFV EALASQVAID  60
ASRSIGRLAA APALANVFQV CSTWRAVSRS DLLWRNLCRR IWGRARRLHD TWREEFIYRH  120
RTAMNFRNRR YNYTTLDFDP AYVSSGTATA LSCRCLALSD FHLAVGFEDG TVRLFDLATR  180
LHVSTCLPHH NVLMGPFSRA VSGIILSRAR LVFASLHGDV NVAALDIVAP LDPVIPTRHV  240
HLGQGASDGA LVDFAGCSRW WVGLYAGAPG QAFRIWDGET EELVFVGGTL TDPEAVMGWH  300
MFTELADFVG RVRVTSQESA VACTSRRVIV FNLRNGGNVH GEQEFAPGFI VGSLDANNEA  360
YVIVDGRGVA SVRRAENLEE VCRFVVGGTS QRRVLGCMNG GYALMCIGSV IRAWEVERGV  420
YLYNLRERTL GDLVAMVADD RYVAACNSDT TIHLWDFGAQ *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in inflorescence and floral meristems, young floral organ primordia, and later in ovule primordia.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4888450.0AM488845.2 Vitis vinifera contig VV78X084604.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002269014.10.0PREDICTED: transcriptional regulator STERILE APETALA isoform X1
SwissprotQ9FKH11e-168SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBLA0A438IFN30.0A0A438IFN3_VITVI; Transcriptional regulator STERILE APETALA
STRINGXP_004305672.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9756912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.11e-162SAP family protein
Publications ? help Back to Top
  1. Li N, et al.
    STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana.
    PLoS Genet., 2018. 14(2): p. e1007218
    [PMID:29401459]