PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01030322001
Common NameVIT_08s0058g00200
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family Trihelix
Protein Properties Length: 227aa    MW: 25355.9 Da    PI: 10.0037
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01030322001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.32e-1333116186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        +W++  + +L+ea  ++  +l+rg+l++++W+ev++++  r+ g+  +++ +qCk++++ l+k+yk +k           s++p++++l+
  GSVIVT01030322001  33 CWSEGATETLVEAWGDRYLELNRGNLRQKDWKEVADAVnsRQNGVkpRKTYIQCKNRIDTLKKKYKLEKSKPAP------SSWPFYSRLD 116
                        7*************************************8877777546799***************99988775......57****9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.9E-2631116No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MDNQAAHPNP RSHHHPFGGG GGGGGGGGGR EDCWSEGATE TLVEAWGDRY LELNRGNLRQ  60
KDWKEVADAV NSRQNGVKPR KTYIQCKNRI DTLKKKYKLE KSKPAPSSWP FYSRLDYLIG  120
AAAAAAPGGK KFAAAAQRKL QKHRMDSMDL SDGAACRELA RAILKFGEIY ERIECAKQQQ  180
MMDLEKQKME FTKDLEVQRM HMFMDAQLEL EKMKHPKFAS GSGKKL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00488DAPTransfer from AT5G05550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3828840.0FQ382884.1 Vitis vinifera clone SS0ABG3YG15.
GenBankFQ3925710.0FQ392571.1 Vitis vinifera clone SS0AFA5YC12.
GenBankFQ3926530.0FQ392653.1 Vitis vinifera clone SS0AFA4YM15.
GenBankFQ3932300.0FQ393230.1 Vitis vinifera clone SS0AFA2YA22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021618398.15e-95trihelix transcription factor ASIL2 isoform X5
SwissprotQ9LJG82e-36ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLF6GXV11e-138F6GXV1_VITVI; Uncharacterized protein
STRINGVIT_08s0058g00200.t011e-139(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.11e-67sequence-specific DNA binding transcription factors