PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01030333001
Common NameLOC104880030, VIT_08s0058g00110, VITISV_022410
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 162aa    MW: 18161.4 Da    PI: 6.9558
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01030333001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48.2e-114586955
                       HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        r RR+ri ++f  L++l+P       +K++ +++Le+A++Y+k+L+
  GSVIVT01030333001 45 ARERRHRISDRFKILQSLVPGG-----TKMDTVSMLEEAIHYVKYLK 86
                       699*****************87.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.2943685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-134196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-124289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-124291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.11E-144289No hitNo description
PfamPF000102.7E-84585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MDYPSSSNPS SSLSSSVANI GKDKKKGGKR SKGVKLSTDP QSVAARERRH RISDRFKILQ  60
SLVPGGTKMD TVSMLEEAIH YVKYLKTQIW LHQTMINFVD DDPSLLYQSD SLPSHQQEAF  120
YSPDETLAMM QPYITTTAPV RDSYCFQGEE TMFSDASVNY Y*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4647480.0AM464748.2 Vitis vinifera contig VV78X157215.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010653434.11e-118PREDICTED: transcription factor LAX PANICLE
TrEMBLA0A438HHN31e-117A0A438HHN3_VITVI; Transcription factor bHLH140
TrEMBLA5BMK91e-117A5BMK9_VITVI; Uncharacterized protein
STRINGVIT_08s0058g00110.t011e-117(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP89411014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.14e-32APRATAXIN-like