PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01030514001
Common NameLOC100246519, VIT_12s0059g01450
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C3H
Protein Properties Length: 451aa    MW: 48747.5 Da    PI: 7.776
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01030514001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.91.3e-114873126
                       --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                       ++++ C +++rtG C yG++C+F+H+
  GSVIVT01030514001 48 PGEPDCIYYLRTGLCGYGSNCRFNHP 73
                       5789*********************8 PP
2zf-CCCH36.48.9e-1292116327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        ++ C +f++tGtCkyG++Ck++H++
  GSVIVT01030514001  92 QPDCGYFLKTGTCKYGSTCKYHHPR 116
                        789********************96 PP
3zf-CCCH40.45e-13137161327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +++C++++rtG Ck+G+ CkF+H++
  GSVIVT01030514001 137 EKPCSYYMRTGLCKFGAACKFHHPQ 161
                        689********************97 PP
4zf-CCCH36.67.6e-12286311227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++Cr+f+ tG CkyG+ Ck++H++
  GSVIVT01030514001 286 DQPECRYFMSTGSCKYGSDCKYHHPK 311
                        689*********************96 PP
5zf-CCCH32.21.9e-10332356226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        +++ C+++  +G CkyG++CkF H+
  GSVIVT01030514001 332 GQAVCSHYNLYGLCKYGPTCKFDHP 356
                        7899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.0E-54774IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2634775IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-94973IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-65274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-45372IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.73789117IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-589116IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-992116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-693118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-495116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-7133162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.056134162IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-6136161IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-10137161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-5138160IPR000571Zinc finger, CCCH-type
SMARTSM003569.2E-6284311IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.446284312IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-10286311IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6287313IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-6290311IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5329356IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892330358IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6330357IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-8332356IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-4335355IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MLDNRQVQSN GVSNPSSENV EEAILRLKIH DNQEEGSVGH SSPYPDRPGE PDCIYYLRTG  60
LCGYGSNCRF NHPAYSEQGA QYRGELPERV GQPDCGYFLK TGTCKYGSTC KYHHPRDRHG  120
AGPVSLNIVG LPMRQEEKPC SYYMRTGLCK FGAACKFHHP QPASAGTVLP ATGPAAFGST  180
GSSILPSSGL PYVGGLPAWS LPRAPYIPGP RMQGPQTYMP IVLSPSQGIV PAQGWNTYMG  240
NMSPISSTGI LGSNLVYNSR NQSESGSSGQ VHLLSSLIPH LPERPDQPEC RYFMSTGSCK  300
YGSDCKYHHP KERIAQLATN TLGPLGLPLR PGQAVCSHYN LYGLCKYGPT CKFDHPLTGY  360
SSYNYCLSLP PLSILDPSLL PYQRNSSTVH SSETSPSKSS KFPDWVQKTE SGSTKSQNPD  420
TKAPEGPPEQ AGSLLHSSPN SSEPPQDQSD *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.134910.0bud| flower| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4389110.0AM438911.2 Vitis vinifera contig VV78X080541.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275775.10.0PREDICTED: zinc finger CCCH domain-containing protein 3
TrEMBLD7TEE80.0D7TEE8_VITVI; Uncharacterized protein
STRINGVIT_12s0059g01450.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12471750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-118C3H family protein