PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01030822001
Common NameMYBA6.1, VIT_14s0006g01290
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 244aa    MW: 27815.5 Da    PI: 9.8342
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01030822001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-14956148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT eEd ll  +++++G g W+ ++ + g++R++k+c++rw++yl
  GSVIVT01030822001  9 KGAWTREEDVLLRTCIEKYGEGKWHQVPFRSGLNRCRKSCRLRWLNYL 56
                       79********************************************97 PP
2Myb_DNA-binding48.71.7e-1562107148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg++ t+E +l+++++k+lG++ W++Ia +++ gRt +++k++w+++l
  GSVIVT01030822001  62 RGKFKTDEVDLIIRLHKLLGNR-WALIAGRLP-GRTSNDVKNYWNTHL 107
                        89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.164156IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.6E-21658IPR009057Homeodomain-like
SuperFamilySSF466895.87E-286103IPR009057Homeodomain-like
SMARTSM007171.3E-12858IPR001005SANT/Myb domain
PfamPF002492.7E-13956IPR001005SANT/Myb domain
CDDcd001678.95E-91156No hitNo description
PROSITE profilePS5129424.00457111IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-2359110IPR009057Homeodomain-like
SMARTSM007172.3E-1461109IPR001005SANT/Myb domain
PfamPF002496.8E-1462107IPR001005SANT/Myb domain
CDDcd001672.09E-964107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDGPSGVRKG AWTREEDVLL RTCIEKYGEG KWHQVPFRSG LNRCRKSCRL RWLNYLRPDI  60
KRGKFKTDEV DLIIRLHKLL GNRWALIAGR LPGRTSNDVK NYWNTHLSKK FFGKAVKDVA  120
DKTAKVTVIK PRPRTFNKNL SYLKGKAAKE SDVQSADHTL SKPYSTPPLS EDGISWLDSL  180
FSGKEGHKES TCFRNGSGKE SISSFWDEEI SAATKVGETF VEENESDWNH FSFDMDLWDL  240
LNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2231111108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5569120.0FJ556912.1 Vitis vinifera R2R3 MYBA6 transcription factor splice variant 1 (MYBA6.1) mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002274992.20.0PREDICTED: transcription factor MYB90
SwissprotQ9FNV96e-67MY113_ARATH; Transcription factor MYB113
TrEMBLB8YPF81e-179B8YPF8_VITVI; R2R3 MYBA6 transcription factor splice variant 1
STRINGVIT_14s0006g01290.t011e-180(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-65myb domain protein 113
Publications ? help Back to Top
  1. Matus JT,Aquea F,Arce-Johnson P
    Analysis of the grape MYB R2R3 subfamily reveals expanded wine quality-related clades and conserved gene structure organization across Vitis and Arabidopsis genomes.
    BMC Plant Biol., 2008. 8: p. 83
    [PMID:18647406]
  2. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  3. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]