PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01030829001
Common NameVIT_14s0006g01340
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 240aa    MW: 27606.9 Da    PI: 8.4607
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01030829001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-14956148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT eEd ll  +++++G g W+ ++ + g++R++k+c++rw++yl
  GSVIVT01030829001  9 KGAWTREEDVLLRTCIEKYGEGKWHQVPFRSGLNRCRKSCRLRWLNYL 56
                       79********************************************97 PP
2Myb_DNA-binding28.43.7e-0962105147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        r  +Tt+E +l+++++++lG+++  +  + ++ gRt +++k++w+++
  GSVIVT01030829001  62 RREFTTDEVDLIIRLHRLLGNRQAPK--HQLP-GRTSNDVKNYWNTH 105
                        6689******************6555..7***.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.755160IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-21659IPR009057Homeodomain-like
SuperFamilySSF466891.76E-227102IPR009057Homeodomain-like
SMARTSM007171.3E-12858IPR001005SANT/Myb domain
PfamPF002492.6E-13956IPR001005SANT/Myb domain
CDDcd001677.15E-91156No hitNo description
Gene3DG3DSA:1.10.10.602.7E-1460109IPR009057Homeodomain-like
SMARTSM007170.001461108IPR001005SANT/Myb domain
PROSITE profilePS5129411.03161110IPR017930Myb domain
PfamPF002495.7E-762105IPR001005SANT/Myb domain
CDDcd001678.26E-564105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MDGPSEVRKG AWTREEDVLL RTCIEKYGEG KWHQVPFRSG LNRCRKSCRL RWLNYLRPDI  60
KRREFTTDEV DLIIRLHRLL GNRQAPKHQL PGRTSNDVKN YWNTHQSKKY FGKAGKDVAD  120
KTAKVTVINT CPRTFYKNLS YLKGKAAKES DVQSADHTLS KPYSTPPLSE DGFSWLDSLF  180
SGKEGQKEST CFRDGSANES ISSFWDEETP AATKVGETFL EEKESDWNHF SFDVDLWDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-1831091107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5569120.0FJ556912.1 Vitis vinifera R2R3 MYBA6 transcription factor splice variant 1 (MYBA6.1) mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010660318.11e-171PREDICTED: transcription factor MYB90
SwissprotQ9FNV91e-51MY113_ARATH; Transcription factor MYB113
TrEMBLD7TSQ41e-178D7TSQ4_VITVI; Uncharacterized protein
STRINGVIT_14s0006g01340.t011e-179(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.14e-54myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]