PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01030846001
Common NameVIT_14s0006g01470
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 348aa    MW: 38463.9 Da    PI: 6.3511
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01030846001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.3e-09262303955
                        HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         ++RR+ri +++  L++l+P+       K++ +++LekA+ Y+k Lq
  GSVIVT01030846001 262 AKNRRERISERLKILQDLVPNG-----SKVDLVTMLEKAISYVKFLQ 303
                        69*******************5.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.243253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-12253310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.81E-12255307No hitNo description
SuperFamilySSF474592.49E-13256312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-12259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-7262303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0048766Biological Processroot hair initiation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MALAKDRTPH DLSMGSVQHC SLIYGNVIGG SAVEGVSDLS SPGVYGLDDY HKAVIEEGDE  60
SEKSSAGFVK PYVMSHASSI SGASSANCNA IRPMNYQPQE AHSVITFKTR YENFMHNSGS  120
LLSFEQNERG SQVTYTKVCH EDDYSNWEDN LNYDYQNQLN PKLNSNPRLL EDFNCFPASS  180
YGSMSGNTPK ENQHGEESFG WIYTEATAVT DSIQESATKE SCFHKRPHMG ETMQALKRQC  240
TAATRKSKPK SIPPKDPQSL AAKNRRERIS ERLKILQDLV PNGSKVDLVT MLEKAISYVK  300
FLQLQVKVLA TDEFWPVQGG KAPDISQVKE AIDAILSSQR DTNSSSK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4783250.0AM478325.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X069135.5, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272414.30.0PREDICTED: putative transcription factor bHLH086
TrEMBLD7TSR60.0D7TSR6_VITVI; Uncharacterized protein
STRINGVIT_14s0006g01470.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP35321326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.13e-56ROOT HAIR DEFECTIVE6