PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01030866001

Common Name

LOC100251783, MYBC2-L3, VIT_14s0006g01620

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

MYB

Protein Properties

Length: 229aa MW: 25422.8 Da PI: 8.8876

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01030866001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.5	2.8e-17	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+d++k +G g+W++ ++ g++R++k+c++rw +yl GSVIVT01030866001 13 KGAWSKQEDQRLIDYIKTHGEGCWRSLPKAAGLHRCGKSCRLRWINYL 60 79********************************************97 PP
2	Myb_DNA-binding	52.4	1.2e-16	66	110	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++ GSVIVT01030866001 66 RGNFGQDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 110 899*****************.*****.*********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.6E-23	4	62	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.803	8	60	IPR017930	Myb domain
SMART	SM00717	1.3E-13	12	62	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.88E-28	12	107	IPR009057	Homeodomain-like
Pfam	PF00249	2.4E-15	13	60	IPR001005	SANT/Myb domain
CDD	cd00167	4.56E-11	15	60	No hit	No description
PROSITE profile	PS51294	25.386	61	115	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-25	63	116	IPR009057	Homeodomain-like
SMART	SM00717	2.8E-15	65	113	IPR001005	SANT/Myb domain
Pfam	PF00249	4.6E-15	66	110	IPR001005	SANT/Myb domain
CDD	cd00167	5.62E-11	68	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MRKPCCDKKD TTKGAWSKQE DQRLIDYIKT HGEGCWRSLP KAAGLHRCGK SCRLRWINYL 60 RPDLKRGNFG QDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH IRKKLINMGI 120 DPNNHRVNQS FAAPLNRCAS AATMSSGSMT GACDNKSLKP SADNDPLSDS ASGLEDEISA 180 SLDLNLDLTI AIPASSLTDV IDKKRQDTKS IFSREVEGDA NPTLILFR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-28	10	115	4	108	B-MYB
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.19515	0.0	fruit

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Widely expressed at low level. Highly expressed in siliques. Weakly expressed in seedlings, young and mature leaves, cauline leaves, stems, flower buds and roots. {ECO:0000269\|PubMed:9839469}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269\|PubMed:11080161}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269\|PubMed:11080161}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM046932	0.0	KM046932.1 Vitis vinifera R2R3 MYB transcription factor (MYBC2-L3) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002273328.1	1e-168	PREDICTED: transcription repressor MYB6
Swissprot	Q9SZP1	4e-76	MYB4_ARATH; Transcription repressor MYB4
TrEMBL	D7TSS6	1e-167	D7TSS6_VITVI; R2R3 MYB transcription factor
STRING	VIT_14s0006g01620.t01	1e-168	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	5e-77	myb domain protein 4

Link Out ? help Back to Top
Phytozome	GSVIVT01030866001
Entrez Gene	100251783

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Schenke D,Cai D,Scheel D Suppression of UV-B stress responses by flg22 is regulated at the chromatin level via histone modification. Plant Cell Environ., 2014. 37(7): p. 1716-21 [PMID:24450952] Cavallini E, et al. The phenylpropanoid pathway is controlled at different branches by a set of R2R3-MYB C2 repressors in grapevine. Plant Physiol., 2015. 167(4): p. 1448-70 [PMID:25659381] Zhou M, et al. Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis. Plant J., 2015. 84(2): p. 395-403 [PMID:26332741] Zhang J, et al. Soybean SPX1 is an important component of the response to phosphate deficiency for phosphorus homeostasis. Plant Sci., 2016. 248: p. 82-91 [PMID:27181950] Zhou M, et al. LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis. Plant Physiol., 2017. 174(3): p. 1348-1358 [PMID:28483877] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275] Verma N,Burma PK Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum. Plant J., 2017. 92(3): p. 481-494 [PMID:28849604]