PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01030969001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C3H
Protein Properties Length: 249aa    MW: 28471.6 Da    PI: 8.1366
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01030969001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH44.13.4e-14181206126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +ktelC+ +++ GtC+yGd C+FaHg
  GSVIVT01030969001 181 FKTELCNKWQEKGTCPYGDLCQFAHG 206
                        79***********************8 PP
2zf-CCCH23.51e-07219244126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        ykte Cr  +++ tC+yG rC+F H+
  GSVIVT01030969001 219 YKTEVCRMVLAGATCPYGHRCHFRHS 244
                        9**********88**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.104.8E-42861No hitNo description
Gene3DG3DSA:4.10.1000.106.0E-18175212IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-10177212IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-8180207IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.108180208IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-11181206IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-11214244IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-7214245IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5218245IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.981218246IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-5219244IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MENESNSLQS RLILECQELC DQYDLCRARL HQLAKEVEAL RQENSDLRSA NRELVEHLNI  60
LSEARMRENF LCYDFRRLSV GEGHGVDEVC GISPTSVIQR KGFRRNVEHI PLPKSISVRS  120
SCYLKMNHSG RSNKAASPQP LNNPLVHATI DSTVVHKDEM VFHAVYNFGF VKVEVYNQGM  180
FKTELCNKWQ EKGTCPYGDL CQFAHGITEL RPIIRHPRYK TEVCRMVLAG ATCPYGHRCH  240
FRHSLCPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-21181244467Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4416840.0AM441684.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X227619.10, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281139.11e-165PREDICTED: zinc finger CCCH domain-containing protein 15
TrEMBLA0A438D0D71e-158A0A438D0D7_VITVI; Zinc finger CCCH domain-containing protein 15
STRINGXP_010062213.12e-78(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP20581636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.21e-61C3H family protein