PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01031035001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family LBD
Protein Properties Length: 188aa    MW: 20293.1 Da    PI: 8.7129
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01031035001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.91.2e-3141081100
             DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                        +C++C+vlr++C+++C+++p++     p++q++++ +++k++G++ +++l+++ pe+ r++++ssl+yeA+ r+ +P+yG+vg++++++++l
  GSVIVT01031035001   4 SCNGCRVLRKGCSDNCTIRPCLqwiktPESQANATVFLAKFYGRAGLMNLINSGPEHLRPAIFSSLLYEACGRIVNPIYGSVGLLWSGSWHL 95 
                        6******************************************************************************************* PP

             DUF260  88 eqlkaelallkee 100
                        +q+++e++l +e+
  GSVIVT01031035001  96 CQAAVEAVLKGEP 108
                        ******9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.2193109IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-254103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDNCT IRPCLQWIKT PESQANATVF LAKFYGRAGL MNLINSGPEH  60
LRPAIFSSLL YEACGRIVNP IYGSVGLLWS GSWHLCQAAV EAVLKGEPIT QITSEAAATG  120
QGPPLKAYDI RHVSKDENSA ANDLHRAKNR CRFKRSGSRL DGESPVGAAY RGGREPRDCE  180
HGVCGDG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.173220.0fruit| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4538111e-154AM453811.2 Vitis vinifera contig VV78X124981.9, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002283795.11e-115PREDICTED: LOB domain-containing protein 41
SwissprotQ9M8869e-88LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA5BBT81e-114A5BBT8_VITVI; Uncharacterized protein
STRINGVIT_14s0006g02950.t011e-114(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.14e-90LOB domain-containing protein 41