PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01031089001
Common NameVIT_14s0060g02660
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NF-YB
Protein Properties Length: 148aa    MW: 16544.8 Da    PI: 7.3415
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01031089001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB162.65.7e-51398297
              NF-YB  2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95
                        eqd++lPianv+rimk++lP +akisk+ ket+qec+sefisfvt+easdkc++e+rkt+ngdd++wal+ lGf+dy+e++  yl+kyre+e+
  GSVIVT01031089001  3 DEQDHLLPIANVGRIMKQILPPRAKISKEGKETMQECASEFISFVTGEASDKCHKENRKTVNGDDICWALSALGFDDYAEAILRYLHKYREFER 96
                       69*******************************************************************************************9 PP

              NF-YB 96 ek 97
                       e+
  GSVIVT01031089001 97 ER 98
                       97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.4E-482112IPR009072Histone-fold
SuperFamilySSF471131.31E-375113IPR009072Histone-fold
PfamPF008082.3E-25972IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006157.2E-183654No hitNo description
PROSITE patternPS0068503955IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006157.2E-185573No hitNo description
PRINTSPR006157.2E-187492No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0004709anatomyaxillary bud
PO:0025532developmental stagebud burst stage
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MVDEQDHLLP IANVGRIMKQ ILPPRAKISK EGKETMQECA SEFISFVTGE ASDKCHKENR  60
KTVNGDDICW ALSALGFDDY AEAILRYLHK YREFERERAN QNKVGGSEDK DEASNCKYIQ  120
AGKQTVIPPP LECRVIKKGN SSLTKPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B5e-40293192Transcription factor HapC (Eurofung)
4g92_B5e-40293192Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:11250072}.
UniprotTISSUE SPECIFICITY: Expressed in flowers, siliques and young rosettes. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00133DAPTransfer from AT1G09030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4809500.0AM480950.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X208183.15, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019080620.11e-108PREDICTED: nuclear transcription factor Y subunit B-4
SwissprotO040272e-54NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
SwissprotO822483e-54NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLD7U9R61e-106D7U9R6_VITVI; Uncharacterized protein
STRINGVIT_14s0060g02660.t011e-107(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.18e-57nuclear factor Y, subunit B4
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]