PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01031203001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GATA
Protein Properties Length: 110aa    MW: 12271.3 Da    PI: 9.2185
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01031203001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.97.5e-202155135
               GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                       C+ C+ttkTplWR gp g+k+LCnaCG++yrk+++
  GSVIVT01031203001 21 CTDCKTTKTPLWRGGPAGPKSLCNACGIRYRKRRS 55
                       ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.4E-151567IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-141655No hitNo description
Gene3DG3DSA:3.30.50.107.2E-161769IPR013088Zinc finger, NHR/GATA-type
PfamPF003209.3E-182155IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.4792170IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402146IPR000679Zinc finger, GATA-type
CDDcd002021.93E-112154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0048527Biological Processlateral root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MMDLSKKESL SEEMNEIKKC CTDCKTTKTP LWRGGPAGPK SLCNACGIRY RKRRSSMVGV  60
NKKKERMNSE TEEEVGGRRT SSCTVDGTLM WLCFCLVEKG QKGGEWLKP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4547781e-61AM454778.1 Vitis vinifera contig VV78X007757.13, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278369.26e-44PREDICTED: GATA transcription factor 16
TrEMBLA0A438DV861e-42A0A438DV86_VITVI; GATA transcription factor 16
TrEMBLA5BCR31e-42A5BCR3_VITVI; Uncharacterized protein
STRINGVIT_14s0060g01520.t012e-42(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16141.14e-14GATA family protein