PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01031331001
Common NameVIT_14s0060g00320
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 314aa    MW: 36200.4 Da    PI: 6.8068
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01031331001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00035175199123
                        EEETTTTEEESSHHHHHHHHHH..T CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                        + C+ C+k ++  +++++H+++  H
  GSVIVT01031331001 175 FYCELCNKQYKLAMEFEVHLSSydH 199
                        79*****************987555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004431.3E-1864109IPR000467G-patch domain
PROSITE profilePS5017416.7566111IPR000467G-patch domain
PfamPF015852.7E-1667107IPR000467G-patch domain
SuperFamilySSF576676.46E-5173206No hitNo description
PfamPF121712.1E-5175202IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280177199IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MDRRWYSGRQ ETSSRDNRQR EREEAYKDSL VEDLAEDFRL PINHKPTENV DLDNVEQASL  60
DTQLTSSNIG FRLLQKMGWK GKGLGKDEQG IIEPIKSGIR DPRLGVGKQE EDDFFTAEEN  120
IQRKKLDVEL EETEEHAKKR EKAAYSIYVC LLTGMVVAER EQKIQTEVKE IRKVFYCELC  180
NKQYKLAMEF EVHLSSYDHN HRKRFKEMRE MHGTSSRDDR QKREQQRQER EMAKFALMAD  240
ARKQQQQQEE ESGNTAVSTT LRSATPLADQ EQRKALKFGF SSKGGMSKNS SGSAAKKPKV  300
SVASVFSNDS DEE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136142AKKREKA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3823200.0FQ382320.1 Vitis vinifera clone SS0ABG62YB01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010659761.10.0PREDICTED: G patch domain-containing protein 8 isoform X1
TrEMBLF6I4I10.0F6I4I1_VITVI; Uncharacterized protein
STRINGVIT_14s0060g00320.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP637078