PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01031387001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 235aa    MW: 25596.1 Da    PI: 9.5878
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01031387001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91.1e-174494155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       + y+GVr++   +rWv+e+rdp++   + r++lg+f t+e+Aa+a++ a+++++g
  GSVIVT01031387001 44 PVYRGVRQRN-GNRWVCEVRDPKT---KSRIWLGTFSTPEMAARAHDVAALAFRG 94
                       68*****999.9*********954...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.8E-124494IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-2145104IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.5E-3045104IPR001471AP2/ERF domain
SMARTSM003801.4E-2845108IPR001471AP2/ERF domain
PROSITE profilePS5103221.77345102IPR001471AP2/ERF domain
PRINTSPR003677.6E-84657IPR001471AP2/ERF domain
CDDcd000181.28E-2946104No hitNo description
PRINTSPR003677.6E-86884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009631Biological Processcold acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MESERDQSSP SSSSSSSQTK CSISSSPVHK RKAGRKKFRE TRHPVYRGVR QRNGNRWVCE  60
VRDPKTKSRI WLGTFSTPEM AARAHDVAAL AFRGNFAALN FPDSASRLPR AKSSSAGDIQ  120
VAALAAAMAF HSPQLESRKK VVGVALEDSE SSEGAPYGSS TVFMDEEALF NMPGLINSMA  180
EGLLLAPPTM LGGFIHCLVF TFSLLHQFYF LFPSLSDDSG KDFHCGCNKL NIKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-13431021272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in developing seeds and apices. {ECO:0000269|PubMed:17136305}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00454DAPTransfer from AT4G25490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4734450.0AM473445.1 Vitis vinifera contig VV78X090477.4, whole genome shotgun sequence.
GenBankAY3903750.0AY390375.1 Vitis vinifera CBF-like transcription factor (Cbf3) gene, complete cds.
GenBankKF5823030.0KF582303.1 Vitis vinifera cultivar Cabernet Sauvignon C-repeat binding factor 3 (CBF3) gene, complete cds.
GenBankKF5823040.0KF582304.1 Vitis labrusca strain 588675 C-repeat binding factor 3 (CBF3) gene, complete cds.
GenBankKF5823050.0KF582305.1 Vitis labrusca strain 483163 C-repeat binding factor 3 (CBF3) gene, complete cds.
GenBankKF5823060.0KF582306.1 Vitis vinifera cultivar Pinot Noir C-repeat binding factor 3 (CBF3) gene, complete cds.
GenBankKF5823070.0KF582307.1 Vitis vinifera cultivar Riesling C-repeat binding factor 3 (CBF3) gene, complete cds.
GenBankKF5823080.0KF582308.1 Vitis riparia strain 483175 C-repeat binding factor 3 (CBF3) gene, complete cds.
GenBankKF5823090.0KF582309.1 Vitis vinifera cultivar Syrah C-repeat binding factor 3 (CBF3) gene, complete cds.
GenBankKF5823100.0KF582310.1 Vitis vinifera cultivar Sangiovese C-repeat binding factor 3 (CBF3) gene, complete cds.
GenBankKF5823110.0KF582311.1 Vitis labrusca strain 588307 C-repeat binding factor 3 (CBF3) gene, complete cds.
GenBankKF5823120.0KF582312.1 Vitis vinifera cultivar Chardonnay C-repeat binding factor 3 (CBF3) gene, complete cds.
GenBankKF5823130.0KF582313.1 Vitis vinifera cultivar Merlot C-repeat binding factor 3 (CBF3) gene, complete cds.
GenBankKF5823140.0KF582314.1 Vitis vinifera cultivar Pinot Grigio C-repeat binding factor 3 (CBF3) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002267961.11e-118PREDICTED: dehydration-responsive element-binding protein 1B
SwissprotA2WZI45e-55DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z55e-55DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLF6GW421e-138F6GW42_VITVI; Uncharacterized protein
STRINGVIT_06s0061g01400.t011e-139(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.12e-55C-repeat/DRE binding factor 1
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]