PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01031761001
Common NameVIT_03s0063g00620
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family B3
Protein Properties Length: 224aa    MW: 25532.3 Da    PI: 9.8472
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01031761001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.78e-17130213190
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                        f+k +++s+v+   +l lp +f++ h  +k  + +++l de+g++  vk+  +k++    l++GW++F+ +++L +gD +vF+l++ ++f
  GSVIVT01031761001 130 FVKPMLQSHVTGGFWLGLPVHFCKMHL-PK-HDEMISLVDEDGNESPVKYLAEKTG----LSGGWRGFAIDHELVDGDALVFQLIKPTKF 213
                        89*********************9994.33.3459***************555555....***********************9987666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-20124216IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-24124216IPR015300DNA-binding pseudobarrel domain
CDDcd100173.11E-26128219No hitNo description
SMARTSM010193.5E-22130222IPR003340B3 DNA binding domain
PfamPF023627.1E-15130213IPR003340B3 DNA binding domain
PROSITE profilePS5086311.039130221IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MGVSEVSYEE SRRKRLEENK KRMEELNLHK LSESLRTARS PKSSPVKKVK PRTPRSPVDL  60
SAVRRSSRFV DKPSPNYKEV PIEPLERSKR LSYQRRDLLN RVYASDEARV YAVERAEELQ  120
SGLETDFPSF VKPMLQSHVT GGFWLGLPVH FCKMHLPKHD EMISLVDEDG NESPVKYLAE  180
KTGLSGGWRG FAIDHELVDG DALVFQLIKP TKFQVLGLKF VPI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4458551e-130AM445855.2 Vitis vinifera contig VV78X102978.13, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010647760.11e-154PREDICTED: B3 domain-containing protein At3g19184 isoform X1
SwissprotQ1G3M39e-87Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLF6HQC11e-155F6HQC1_VITVI; Uncharacterized protein
STRINGVIT_03s0063g00620.t011e-156(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-73B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]