PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01031763001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family B3
Protein Properties Length: 161aa    MW: 18405.2 Da    PI: 7.3411
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01031763001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.41.1e-1740123493
                        E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                 B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                        ++++s+v k  ++++p++f++ h  + e++ t++lede g+++e ++ +++++    l++GW++F  +++Lk+gD++vF l+g  +f+ +
  GSVIVT01031763001  40 TMSRSNVAKGFWMYFPRSFCKLHL-P-ENDATIILEDEAGEEYETNFLVNRSG----LSAGWRKFSLDHQLKVGDILVFLLVGPCKFKVF 123
                        7899****************8884.3.46789***************666666....9***********************998777433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-2331127IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-1932126IPR015300DNA-binding pseudobarrel domain
CDDcd100171.05E-2435126No hitNo description
SMARTSM010191.0E-1937128IPR003340B3 DNA binding domain
PROSITE profilePS5086312.99937128IPR003340B3 DNA binding domain
PfamPF023622.0E-1540123IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MTDPLICCLY DLYLNRYPLM EQAKKIIADH GSELPSLTRT MSRSNVAKGF WMYFPRSFCK  60
LHLPENDATI ILEDEAGEEY ETNFLVNRSG LSAGWRKFSL DHQLKVGDIL VFLLVGPCKF  120
KVFIVRVENT IEDDVAGCLL DLRDSRRKNP SLGRRSSREQ *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4458551e-113AM445855.2 Vitis vinifera contig VV78X102978.13, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010647763.11e-101PREDICTED: B3 domain-containing protein At3g19184
RefseqXP_010647764.11e-101PREDICTED: B3 domain-containing protein At3g19184
RefseqXP_010647765.11e-101PREDICTED: B3 domain-containing protein At3g19184
RefseqXP_010647767.11e-101PREDICTED: B3 domain-containing protein At3g19184
RefseqXP_019073960.11e-101PREDICTED: B3 domain-containing protein At3g19184
RefseqXP_019073965.11e-101PREDICTED: B3 domain-containing protein At3g19184
TrEMBLF6HQC21e-103F6HQC2_VITVI; Uncharacterized protein
STRINGVIT_03s0063g00640.t011e-104(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-31B3 family protein