PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01031841001

Common Name

LOC104878796, VIT_03s0063g01350

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

Dof

Protein Properties

Length: 174aa MW: 18977 Da PI: 8.2376

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01031841001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	105.2	3.7e-33	21	75	3	57
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrk 57 +++l+cprC+stntkfCyynny+lsqPr+fCk+CrryWt+GGalr++P + k GSVIVT01031841001 21 HHHLQCPRCNSTNTKFCYYNNYNLSQPRHFCKSCRRYWTHGGALRDIPARDNAPK 75 57899*******************************************8655544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.3E-29	23	76	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-20	24	69	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.636	24	78	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	26	62	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MQSEPGNHQR PTGPPPPPEN HHHLQCPRCN STNTKFCYYN NYNLSQPRHF CKSCRRYWTH 60 GGALRDIPAR DNAPKRSRSR SSPVTPPLAS YPPQRVPPDL NVGASGSFTR LLNSHGSEFS 120 GLGAEYGLGS GLHEVGDGGA WQIGIGEEVE LVEGNGFTWP DIHVSAPGRI LKE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	74	79	KRSRSR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM441181	0.0	AM441181.2 Vitis vinifera contig VV78X056020.4, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010647796.1	1e-126	PREDICTED: dof zinc finger protein DOF1.6-like
TrEMBL	D7TPS0	1e-125	D7TPS0_VITVI; Uncharacterized protein
STRING	VIT_03s0063g01350.t01	1e-125	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66940.1	4e-28	Dof family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01031841001
Entrez Gene	104878796